Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6205
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   3.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   5.2  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   9.0  

>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 128 FISHK*SNKISRLM*EKYLVLVEHIVINVTXLXGV 24
           F+    +  +SRL  +KYLVL  H++IN     G+
Sbjct: 313 FVEQLKAGTLSRLPFQKYLVLKYHMLINNAQAAGM 347


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 129 ITRLSALFILEIIFTIY*ASRRIFSVGRDFGSLDPVLDSANL 254
           I  LS L  LE++FT + A   +  + RD+ SLD +++ ++L
Sbjct: 765 IRYLSDLSNLELLFTKHVAVLILHPLVRDYYSLDELMEMSDL 806


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 449 LPYPSNRNALLLHGRNR 499
           LPY  N   L LHG NR
Sbjct: 198 LPYTGNSRGLYLHGLNR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,927
Number of Sequences: 5004
Number of extensions: 50453
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)