Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6205
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         29   3.0  
06_01_0192 - 1485444-1485491,1485582-1485648,1485780-1485890,148...    29   4.0  
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600           28   5.3  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +2

Query: 479 LLHGRNRQGSGTHPRGLTVGPTTS 550
           LL GR R G G H RGL V P  S
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVS 313


>06_01_0192 -
           1485444-1485491,1485582-1485648,1485780-1485890,
           1486278-1486343,1486814-1486878,1486952-1487014,
           1487215-1487337,1487777-1487887,1488030-1488148,
           1488721-1488806,1488918-1489267
          Length = 402

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 302 ILVLFFYCLYGWTSSQPT 355
           IL LF+Y ++GW   +PT
Sbjct: 378 ILTLFYYAIFGWRKRKPT 395


>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
          Length = 585

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 488 REAVMRFGLKGRAAVVSILETLELISQGGWRIYVVYG 378
           R A++R  +KG+  +  ++  LE +  GGWR  V +G
Sbjct: 345 RAALIRV-IKGKLTINEVIAELERLIPGGWRRMVEWG 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,610
Number of Sequences: 37544
Number of extensions: 324165
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)