Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6205
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 524 RADGYHYPAYFC 489
           RA GYHY A  C
Sbjct: 193 RASGYHYNALTC 204


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 603 LAYQINKFSTMNSSTYQLLVVGPTVSPRGWVPLPCLFLP 487
           LA+    F T N+   ++  +  T+S    V + CLF P
Sbjct: 862 LAFVPLYFGTGNNVALRITSMSVTISLSASVTIACLFSP 900


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 543 VGPTVSPRGWVPLPCLFLP 487
           VG TV+P    PLP L LP
Sbjct: 463 VGTTVAPCFEEPLPSLPLP 481


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 628 KPQYVGWRSSVSN 590
           KP+Y+ WR ++S+
Sbjct: 396 KPRYMVWRETISS 408


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 628 KPQYVGWRSSVSN 590
           KP+Y+ WR ++S+
Sbjct: 311 KPRYMVWRETISS 323


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 628 KPQYVGWRSSVSN 590
           KP+Y+ WR ++S+
Sbjct: 630 KPRYMVWRETISS 642


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 461 SNRNALLLHGRNRQGSGTHPRGLT 532
           +  NA+LL GR+++ +   P G T
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPT 389


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 181 Q*IVNIISSMNNADRRVILYLINNLIKSVG*CKKN 77
           Q IVN   + +  + R++   +NNLIK+    K N
Sbjct: 387 QKIVNNDFNFDEVNFRILGANVNNLIKNTRCAKSN 421


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 345 HSPPDVKWLLEPIDNVNAPPTLRYK 419
           H+    KW    I+N N   T +YK
Sbjct: 122 HTSDQHKWFQMSINNTNNNNTNKYK 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,508
Number of Sequences: 438
Number of extensions: 3991
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)