Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6204
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily ass...    29   3.6  
AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    28   6.4  
AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine r...    28   8.4  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    28   8.4  

>L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 307 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 695 MIVCDLFPCHLFN*DT--NSTHLITSDHVLLTIYRWQW 588
           ++VC  FPC L    +  N  HL+T D   + I+R+ W
Sbjct: 71  VVVCS-FPCRLHEKRSQQNEKHLLTRDFYQVLIHRYDW 107


>AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 384 LCHN*YYNFFY*IADWREKHTSII 455
           LCH  +Y   Y   DWR K+T+ +
Sbjct: 115 LCHENFYKLLYVDNDWRTKYTNSV 138


>AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein49 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 627 FGSCF-TDHIQMAMETILIKIKGIKTRIHTWRLVVNWSQTSNSNISNIR*MARLI 466
           F S F +D +  +M T L     ++T+I +W L+ + S  S  +I     +ARLI
Sbjct: 167 FQSTFGSDSMDSSMLTALYNEASLETKIRSWNLISSASALSILSIITFFILARLI 221


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 609 DHIQMAMETILIKIKGIKTRIHTWRLVVNWSQTSNSNISNIR*MARLI 466
           D  +  M   L  +   +T    W   ++WS  S ++I++   MARLI
Sbjct: 174 DSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFFVMARLI 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,935
Number of Sequences: 27780
Number of extensions: 300662
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)