Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6203
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    29   3.2  
CU457740-10|CAM36340.1|  351|Caenorhabditis elegans Hypothetical...    28   5.6  
U58743-4|AAB00617.1|  177|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +3

Query: 471  LVDKISVVTVDSF*DILEKLKLCLSFPKITTLNYVRVRLAQELLMIIFVDIKIKKTCEFI 650
            +  +  VV VDSF   +  +K  + +      N   ++++QE++ +  V +K     E+ 
Sbjct: 908  VASRFCVVVVDSFTKKIHNMKSYIGYNATLEFNKYIIKISQEIMSLPSVRMKKLTQDEWT 967

Query: 651  VFIVNKDMMLPH 686
             F  NK+   PH
Sbjct: 968  EF--NKNQECPH 977


>CU457740-10|CAM36340.1|  351|Caenorhabditis elegans Hypothetical
           protein C50E10.10 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 255 WTLQP*TFARQPPTFPTMNLFIPSIFFRHYSYS 157
           WT +     + P  F  + L++P +F  HY YS
Sbjct: 104 WTSELSDMVQVPNFFQVLALYLPGLFIWHYIYS 136


>U58743-4|AAB00617.1|  177|Caenorhabditis elegans Hypothetical
           protein F39F10.5 protein.
          Length = 177

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -2

Query: 658 IKTINSQVFFILI---STKIIISNSCASLTRT*FSVVILGKLKHNLSFSRM 515
           +K I S++ F+ +   + ++ +++  ASL       V+ GK  HN++ SR+
Sbjct: 57  VKIIISKIMFVYLQPPAIRVSVASENASLKHILAVTVVRGKTVHNIALSRL 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,969
Number of Sequences: 27780
Number of extensions: 246909
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)