Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6201
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       29   0.74 
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    27   2.3  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   5.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   6.9  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   6.9  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.2  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +3

Query: 504 RQLLILKLNNA*SIVNLTTDYHYIV*NKVAFSVPISLCMLKSDFDAIFF 650
           + LL+L  +N+ S+++++T       + ++ S+P SLC L SDF  I F
Sbjct: 398 KNLLLLSEDNSLSLLDISTGNI----SNMSLSIPPSLCFLASDFRVIAF 442


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -2

Query: 444 RTLIILKLIISMNYSRISTIVISKYKFIGTIIKALYKKGTSLKIVVIERSCLPSPWILYL 265
           R  +I   +++ N+    +     +  I  I +  Y KG  L I VI R C   P + ++
Sbjct: 166 RVSVIPNALVAENFQPDPSKASKDFLTIVVISRLYYNKGIDLLIAVIPRICAQHPKVRFV 225

Query: 264 LI*TAPCS 241
           +    P S
Sbjct: 226 IAGDGPKS 233


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 766 LLATRSRFASETLIYY*FLHYLMDVIIHINLPLQSLYLLK 647
           +L    R  S  L+ Y FL+Y  + II + LPL +L+ ++
Sbjct: 522 ILVVSHRIVSNILMTY-FLNYHPEDIIDVGLPLHTLFCIE 560


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 393 STIVISKYKFIGTIIKA-LYKKGTSLKIVVIERSCLPSPWILYLLI*TAPCSR 238
           ST  + K    G ++   LY   T  ++  + R C   PW  +++I    C R
Sbjct: 44  STDELQKSMSTGVLVNGDLYPSPTEEELATLPRVCGTIPWKAFIIIIVELCER 96


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 199 GLAMRLIVICFYINVERKLTQKRPFFLDIWTSSEPTW 89
           GL   +  +CF   +   L Q  PF + +  S+ P W
Sbjct: 418 GLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAW 454


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 365 NLYLLMTIVEIRL*FIEIISFNIIRVLLSKTI 460
           NL+++ + + I L FI +ISF  +R L S T+
Sbjct: 142 NLFIIFSPIIITLPFIALISFLHLRSLSSLTV 173


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 105 AQSPPGVKWLLEPIDIHNVNAPPTLR 28
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,511
Number of Sequences: 5004
Number of extensions: 64881
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)