Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6197
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 28 1.3
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 28 1.7
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 3.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 5.2
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 5.2
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 6.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 6.9
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 6.9
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 6.9
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 25 9.1
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 25 9.1
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 9.1
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 172 TLTGVSPLITNERLNESLTKWFGEETTFTHWEYVGDTGKGDSYLSELIR 318
T+T S +N R ES+T G + +WE++ T KG+S++ IR
Sbjct: 294 TVTDDSTSPSNYRFIESVT--CGTPFVYENWEWIPVTIKGNSFMLNQIR 340
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 398 LGA*RSAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTSFVWK 577
LG RSA+M S +++ +Y ++ S +++P+N + + + + S
Sbjct: 306 LGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGL 365
Query: 578 TNRYMITAV---PSDRKV*IMTTR 640
NR TA PS RK + TR
Sbjct: 366 RNRTSPTAAPPPPSRRKTGGLNTR 389
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 141 KAKQNGRRLQNVDRRVSSHHQRETERISNQMVR*GNNLHPLGVCRRHRQG*FLPQRVDSH 320
K K +R ++ +R+ + ++I Q R + LH G H G ++VD
Sbjct: 519 KTKLENQR-RDKERQEELRRKEAMQKIEEQSKRDYDKLHGEG----HSLGINNVRKVDEL 573
Query: 321 QNLRPEFKQRVE 356
Q+L PE + R+E
Sbjct: 574 QSLSPEMRMRIE 585
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.2
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = -3
Query: 770 SPTGVRGSTSLAILYESSRTHPGFWSFIANDIAWNRAKTLNDNFAWS*SIPSCLT----A 603
S T + S+S + L SS T P SFI + ++ + ++ + + + + S + LT A
Sbjct: 53 SATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSA 112
Query: 602 PP*SYIDSSSKQMTSWTPSTYENNNFGHLSNGSLA 498
P S SSS ++S + S +++ +S+ SL+
Sbjct: 113 SPTS--SSSSHALSSSSSSLVASSSSSGMSSSSLS 145
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 389 KTYLGA*RSAAMSSSITRSVSTRKSYL-NYQSSEPQKAPMNRSTNARNCYSHTS 547
K+Y + S+A SSS + S+S Y Y S+ P A N ++ + Y ++S
Sbjct: 112 KSYSDSSTSSARSSSTSGSISLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSS 165
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 227 PNGSVRKQPSPIGSMSATPAR 289
P+G+ PSPI S+ + P+R
Sbjct: 142 PHGNTSNHPSPISSLESLPSR 162
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 265 EYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCVLKSIPKNVSR 402
E GD KG S + I G N + +S H+Q + KSI K +R
Sbjct: 5 EAEGDILKGKSRIL-FPGTYIVGRNVSDDSSHIQVISKSISKRHAR 49
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 413 SAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTS 565
S++ SSS + S S+ S + SS P+ ST++ SH+S+ S +S
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSS----SHSSSSSSSS 226
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 322 KIYGLN--SNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEIS 447
++YG++ NK+ + + L K R++ FF+NEIS
Sbjct: 264 RVYGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEIS 307
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 455 RKSYLNYQSSEPQKAPMNRSTNAR-NCYSHTSTGSMTSFV 571
R L+ +SE K R A NC++HTS S+ SF+
Sbjct: 660 RLEQLSEFNSEKFKTVSKREVEALVNCFNHTSFTSLLSFL 699
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 208 RLNESLTKWFGEETTFTHWEYVGDTGKGDSYLSELIR 318
+L+ L W + F H+ GD GK D +++ L+R
Sbjct: 214 QLSSPLGGW--RDRKFKHFIEGGDAGKRDEHINSLVR 248
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 590 YIDSSSKQMTSWTPSTYENNNFGHLSNGS 504
Y +Q S TP+ Y N+N GH S S
Sbjct: 21 YAKPQPRQPASPTPTAYLNSNDGHSSAAS 49
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2
Query: 464 YLNYQSSEPQKA 499
YLNYQ +EP+KA
Sbjct: 321 YLNYQENEPEKA 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,560
Number of Sequences: 5004
Number of extensions: 63233
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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