Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6197
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    29   4.8  
AF047663-5|AAC04446.2|  247|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55D5A.3 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 211 LNESLTKWFGEETTFTHWEYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCVLKSIP 387
           LN    +WF  ET F +W+  GD    D  ++ + ++K  G  +  E   V+ VL ++P
Sbjct: 271 LNVDANQWFLVETNFDNWKKQGD----DRRITAIQKLKELGRRNFDEKSMVE-VLSTVP 324


>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/84 (23%), Positives = 40/84 (47%)
 Frame = +1

Query: 310 LIRIKIYGLNSNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEISFYEKVLPELSKFRA 489
           LI +  YGL +  +  + +   ++ P   +   T  S E  Y E+   +  +P+L+K+R 
Sbjct: 10  LIVLAFYGL-AGAQDANPEVTTEAAPVEAT---TPTSQEQLYEEVK--KSFIPKLNKYRR 63

Query: 490 SKSANEPFDKCPKLLFSYVDGVHD 561
             +    +    +L++  V+G HD
Sbjct: 64  EVAKRLNWTNMNELVYGEVEGYHD 87


>AF047663-5|AAC04446.2|  247|Caenorhabditis elegans Hypothetical
           protein W09G12.8 protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 424 EFFYNEISFYEKVLPELSKFRASKSANEPFDKCPKLLFS-YVDGVHDVI 567
           E  Y E+   E   P L++F A + +N P    P+L  S YV+  +DV+
Sbjct: 119 ECHYPELKDVELEDPVLNRFGAFEGSNTPIKLSPQLSQSNYVEFTYDVV 167


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 300 PQRVDSHQNLRPEFKQRVEARPVRIKEHPKKR 395
           P R+   +N RPEF +RVEAR   I+   +KR
Sbjct: 315 PPRIHLERN-RPEFIERVEARQSIIRAASEKR 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,529,706
Number of Sequences: 27780
Number of extensions: 345301
Number of successful extensions: 1119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)