Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6195
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...   101   9e-23
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    31   0.24 
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   3.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   7.0  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    26   7.0  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   9.2  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score =  101 bits (243), Expect = 9e-23
 Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
 Frame = +1

Query: 220 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXX 399
           +K++ E +  D EDESL+K+K +L      G      +D R V++ KL+L V GR     
Sbjct: 32  KKSLNEYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDV 88

Query: 400 XXXXXXXXX--KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMV 573
                      +K+ F IKEG +++I + F VQ E++ GL+YVQ   R G  VDK + M+
Sbjct: 89  NMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKTSTMI 148

Query: 574 GSYPPKTEIQSYTTPPEDAPSGMMARG 654
           GSY P      +T+ P++AP+GM+ARG
Sbjct: 149 GSYGPSETPYDFTSEPDEAPTGMLARG 175



 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 653 GSYSVNSLFTDDDKNVHLQWEWSFEIKKDWK 745
           G Y  N  F DDDK VH ++ W+F++ K WK
Sbjct: 175 GHYEANGKFVDDDKVVHHEFVWAFDVAKSWK 205


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 220  EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVE 327
            EKT++E++   +++ SL  Y+E  L + QA  V +E
Sbjct: 1613 EKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLE 1648


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 507 VHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSEIQLDIIAPN 376
           +H L  ND++D +  L T L   ++L  +    +   L++  PN
Sbjct: 46  IHKLYRNDELDVFKYLTTQLKDNWILLNLCAEETVYHLELFKPN 89


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -1

Query: 627  ILGGRCVRLNLSFGGIGADHMSH-LVNWNAQSVGLLHVLQTVHD 499
            +L G C  L L F G G       L+N+    + L H+    HD
Sbjct: 1096 VLAGICFSLGLRFAGTGNPKAKEILINFLDSFIRLCHLPAKTHD 1139


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 442 VIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVG 576
           ++  G+   ++I  I   ++VHG+KY      +G+  D    +VG
Sbjct: 265 LLSGGLDGHVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVG 309


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 54  YLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
           +  F C      L L  + ++ CY+   VWR
Sbjct: 80  FTAFLCLTFVAFLYLLDRLYINCYEYFIVWR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,879
Number of Sequences: 5004
Number of extensions: 60792
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)