Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6195
         (780 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061221-1|AAL28769.1|  201|Drosophila melanogaster LD16419p pro...   225   5e-59
AE014296-3251|AAF49090.1|  201|Drosophila melanogaster CG7823-PA...   225   5e-59
M31162-1|AAA28859.1|  448|Drosophila melanogaster protein ( D.me...    30   4.1  
AY089622-1|AAL90360.1|  448|Drosophila melanogaster RE35772p pro...    30   4.1  
AY061501-1|AAL29049.1|  448|Drosophila melanogaster LD46049p pro...    30   4.1  
AE014298-2522|AAF48698.1| 1247|Drosophila melanogaster CG5004-PA...    30   4.1  
AE014134-1210|AAF52471.1|  448|Drosophila melanogaster CG8749-PA...    30   4.1  
U61976-1|AAC47727.1|  138|Drosophila melanogaster cell death pro...    29   5.4  
BT003512-1|AAO39516.1|  138|Drosophila melanogaster RE28551p pro...    29   5.4  
AE014296-3013|AAF49265.1|  138|Drosophila melanogaster CG4345-PA...    29   5.4  
AE014298-2015|AAF48358.3| 1021|Drosophila melanogaster CG33249-P...    29   7.2  
AE013599-1882|AAF58252.2|  475|Drosophila melanogaster CG30070-P...    29   7.2  

>AY061221-1|AAL28769.1|  201|Drosophila melanogaster LD16419p
           protein.
          Length = 201

 Score =  225 bits (550), Expect = 5e-59
 Identities = 114/170 (67%), Positives = 126/170 (74%)
 Frame = +1

Query: 145 EPEVAHTPXXXXXXXXIKSSYKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIV 324
           E E  H P          ++Y+ PPEKTIEEI+AADQEDESLR+YKEALLG AQ   +IV
Sbjct: 3   ETETKHHPEHHDDDVH-DANYQAPPEKTIEEIMAADQEDESLRRYKEALLGAAQTEKIIV 61

Query: 325 EPDDPRKVIVKKLALCVVGRXXXXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIV 504
           EP+DPRKVIVKKLAL V GR              KKQ+FVIKEGVQY++RIDFIVQREIV
Sbjct: 62  EPNDPRKVIVKKLALVVEGRDDMELDLTGDLSQLKKQLFVIKEGVQYKVRIDFIVQREIV 121

Query: 505 HGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTTPPEDAPSGMMARG 654
           HGLKYVQKT RLGV VDKM HMVGSYPPK EIQ Y TP E+APSG  +RG
Sbjct: 122 HGLKYVQKTSRLGVNVDKMKHMVGSYPPKKEIQFYLTPAEEAPSGTFSRG 171



 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 25/53 (47%), Positives = 33/53 (62%)
 Frame = +2

Query: 584 PPKLRFSLTQXXXXXXXXXXXXEGSYSVNSLFTDDDKNVHLQWEWSFEIKKDW 742
           PPK                    G+YSV+S+FTDDDK++HL+W+W+FEIKKDW
Sbjct: 148 PPKKEIQFYLTPAEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDW 200


>AE014296-3251|AAF49090.1|  201|Drosophila melanogaster CG7823-PA
           protein.
          Length = 201

 Score =  225 bits (550), Expect = 5e-59
 Identities = 114/170 (67%), Positives = 126/170 (74%)
 Frame = +1

Query: 145 EPEVAHTPXXXXXXXXIKSSYKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIV 324
           E E  H P          ++Y+ PPEKTIEEI+AADQEDESLR+YKEALLG AQ   +IV
Sbjct: 3   ETETKHHPEHHDDDVH-DANYQAPPEKTIEEIMAADQEDESLRRYKEALLGAAQTEKIIV 61

Query: 325 EPDDPRKVIVKKLALCVVGRXXXXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIV 504
           EP+DPRKVIVKKLAL V GR              KKQ+FVIKEGVQY++RIDFIVQREIV
Sbjct: 62  EPNDPRKVIVKKLALVVEGRDDMELDLTGDLSQLKKQLFVIKEGVQYKVRIDFIVQREIV 121

Query: 505 HGLKYVQKTYRLGVPVDKMTHMVGSYPPKTEIQSYTTPPEDAPSGMMARG 654
           HGLKYVQKT RLGV VDKM HMVGSYPPK EIQ Y TP E+APSG  +RG
Sbjct: 122 HGLKYVQKTSRLGVNVDKMKHMVGSYPPKKEIQFYLTPAEEAPSGTFSRG 171



 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 25/53 (47%), Positives = 33/53 (62%)
 Frame = +2

Query: 584 PPKLRFSLTQXXXXXXXXXXXXEGSYSVNSLFTDDDKNVHLQWEWSFEIKKDW 742
           PPK                    G+YSV+S+FTDDDK++HL+W+W+FEIKKDW
Sbjct: 148 PPKKEIQFYLTPAEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDW 200


>M31162-1|AAA28859.1|  448|Drosophila melanogaster protein (
           D.melanogaster U1 70Ksmall nuclear ribonucleoprotein
           gene, complete cds. ).
          Length = 448

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 547 PVDKMTHMVGS--YPPKTEIQSYTTPPEDAPSGMMARGIVQRQQPLHRRRQERPPSVGVE 720
           PVDK+ H   S  Y    +  +    P+D P   + + +  RQ+ L RRR+E+   V  +
Sbjct: 24  PVDKLPHEKKSRGYLGVAKFMADFEDPKDTP---LPKTVETRQERLERRRREKAEQVAYK 80

Query: 721 LRNQEGL 741
           L  +  L
Sbjct: 81  LEREIAL 87


>AY089622-1|AAL90360.1|  448|Drosophila melanogaster RE35772p
           protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 547 PVDKMTHMVGS--YPPKTEIQSYTTPPEDAPSGMMARGIVQRQQPLHRRRQERPPSVGVE 720
           PVDK+ H   S  Y    +  +    P+D P   + + +  RQ+ L RRR+E+   V  +
Sbjct: 24  PVDKLPHEKKSRGYLGVAKFMADFEDPKDTP---LPKTVETRQERLERRRREKAEQVAYK 80

Query: 721 LRNQEGL 741
           L  +  L
Sbjct: 81  LEREIAL 87


>AY061501-1|AAL29049.1|  448|Drosophila melanogaster LD46049p
           protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 547 PVDKMTHMVGS--YPPKTEIQSYTTPPEDAPSGMMARGIVQRQQPLHRRRQERPPSVGVE 720
           PVDK+ H   S  Y    +  +    P+D P   + + +  RQ+ L RRR+E+   V  +
Sbjct: 24  PVDKLPHEKKSRGYLGVAKFMADFEDPKDTP---LPKTVETRQERLERRRREKAEQVAYK 80

Query: 721 LRNQEGL 741
           L  +  L
Sbjct: 81  LEREIAL 87


>AE014298-2522|AAF48698.1| 1247|Drosophila melanogaster CG5004-PA
           protein.
          Length = 1247

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = +1

Query: 550 VDKMTHMVGSYPPKTEIQSYTTPPEDAPSGM-----MARGIVQRQQPLHRRRQERPPSVG 714
           ++ +T  + S   +T+    +  P  AP  +       R ++QR++ L R   E PPS G
Sbjct: 536 INNLTLNLQSVESQTQSPKPSRKPAPAPRSIHLEQRQRRELIQRRKQLKRELAELPPSAG 595

Query: 715 VE-LRNQEGLERLSLAFIPR 771
           +E L  + G + L+ +  PR
Sbjct: 596 IEGLELKLGEQPLAPSASPR 615


>AE014134-1210|AAF52471.1|  448|Drosophila melanogaster CG8749-PA
           protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 547 PVDKMTHMVGS--YPPKTEIQSYTTPPEDAPSGMMARGIVQRQQPLHRRRQERPPSVGVE 720
           PVDK+ H   S  Y    +  +    P+D P   + + +  RQ+ L RRR+E+   V  +
Sbjct: 24  PVDKLPHEKKSRGYLGVAKFMADFEDPKDTP---LPKTVETRQERLERRRREKAEQVAYK 80

Query: 721 LRNQEGL 741
           L  +  L
Sbjct: 81  LEREIAL 87


>U61976-1|AAC47727.1|  138|Drosophila melanogaster cell death
           protein GRIM protein.
          Length = 138

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 589 KTEIQSYTTPPEDAPSGMMARGIVQRQQPLHRRRQERP---PSVGVELRNQEGLERLS 753
           +T     TT    APS    +   Q+QQ  H  +Q+RP    ++ V L +Q+G   +S
Sbjct: 24  QTAASPRTTATAAAPSQQQQQSQQQQQQQRHHHQQQRPQFRANISVPLGSQQGSMTMS 81


>BT003512-1|AAO39516.1|  138|Drosophila melanogaster RE28551p
           protein.
          Length = 138

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 589 KTEIQSYTTPPEDAPSGMMARGIVQRQQPLHRRRQERP---PSVGVELRNQEGLERLS 753
           +T     TT    APS    +   Q+QQ  H  +Q+RP    ++ V L +Q+G   +S
Sbjct: 24  QTAASPRTTATAAAPSQQQQQSQQQQQQQRHHHQQQRPQFRANISVPLGSQQGSMTMS 81


>AE014296-3013|AAF49265.1|  138|Drosophila melanogaster CG4345-PA
           protein.
          Length = 138

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 589 KTEIQSYTTPPEDAPSGMMARGIVQRQQPLHRRRQERP---PSVGVELRNQEGLERLS 753
           +T     TT    APS    +   Q+QQ  H  +Q+RP    ++ V L +Q+G   +S
Sbjct: 24  QTAASPRTTATAAAPSQQQQQSQQQQQQQRHHHQQQRPQFRANISVPLGSQQGSMTMS 81


>AE014298-2015|AAF48358.3| 1021|Drosophila melanogaster CG33249-PA
           protein.
          Length = 1021

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 574 GSYPPKTEIQSYTTPPEDAPSGMMARGIVQRQQPLHRRRQERPPSVGVEL--RNQEGLER 747
           G+ PP++  Q +     D  +G  A G     +  HRR Q  PP +GV L    Q GL+R
Sbjct: 80  GNGPPRSSTQLF-----DGSAG--AGGATTSSRRAHRRTQSLPPKLGVRLFVPQQCGLQR 132

Query: 748 L 750
           +
Sbjct: 133 V 133


>AE013599-1882|AAF58252.2|  475|Drosophila melanogaster CG30070-PA
           protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 429 KAGIRDKGGCTIPNKDRFYRSARDRARSEVRAED 530
           KA  R+K G T+ ++  FY   RD+ RS   ++D
Sbjct: 84  KAASREKRGLTLMSRSVFYAMLRDKLRSPSSSKD 117


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,913,817
Number of Sequences: 53049
Number of extensions: 692809
Number of successful extensions: 2025
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2025
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)