Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6194
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    28   1.2  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 190 KSSLIINEKTIFKRFNILKYSFISLDKHNILLITTRIFRKGSSSILN*VVSKTPRMRASV 369
           KS   +  + +     +L    + LDK N+ L  TRI+      +LN  + K  R + + 
Sbjct: 157 KSMFDVRARVVQGHLILLARLVVRLDKVNVRLNETRIY----IDLLNDFLLKDCRKKQAT 212

Query: 370 ASKILKYVP 396
             KI+K +P
Sbjct: 213 YDKIIKQIP 221


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 7   GTREKGDRYNPTVNSYLFLINIEEFKL-QLNVDS 105
           G +    RYNPT  SYL     ++ KL  L+ DS
Sbjct: 154 GQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,778
Number of Sequences: 5004
Number of extensions: 42807
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)