Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6194
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582...    30   1.6  
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    27   8.3  

>05_02_0030 +
           5826065-5826092,5826307-5828309,5828412-5828732,
           5828821-5828907,5828981-5829583,5829680-5829844,
           5829941-5830235,5830320-5830534,5830621-5830926,
           5831200-5831263,5831384-5831623,5831756-5831853
          Length = 1474

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 310 GSSSILN*VVSKTPRMRASVA-SKILKYVPNTRYVRS 417
           G SS+L  ++ + PRM  SVA S  + YVP T +++S
Sbjct: 659 GKSSLLCAMLGEIPRMSGSVAMSGSIAYVPQTPWIQS 695


>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 558 KSEDGRSPRRSGFAQRHRATHIKTP*PKFKNSTG 457
           K++ GRSP++ G  +    + IK P  K KN+ G
Sbjct: 273 KNQLGRSPQKLGEPKIKEVSDIKEPPVKLKNNAG 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,397
Number of Sequences: 37544
Number of extensions: 240137
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)