Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6194
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical
           protein E03H4.4 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 241 LKYSFISLDKHNILLITTRIFRKGSSSILN*VVSKTPRMRASVASKILKYVP 396
           +KY  I L    +LL+   IF+   S+I + V+S TP  R   A K + + P
Sbjct: 6   IKY-LIFLTVFGVLLVLFLIFKLHESTITSPVISYTPNPRFVAAIKSIGFPP 56


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 548 TAGRPDGQVSLKDTEPHT*KHHNRNLRIPPVTGSVR--RLAYNSSQD 414
           +A RP+  ++ +    H   HH+ +L IPP T S+R   L   SSQD
Sbjct: 841 SAARPNNNLNQQQQHHHQ-SHHHPSL-IPPTTTSIRSPTLGPPSSQD 885


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical protein
            C27D8.3a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 548  TAGRPDGQVSLKDTEPHT*KHHNRNLRIPPVTGSVR--RLAYNSSQD 414
            +A RP+  ++ +    H   HH+ +L IPP T S+R   L   SSQD
Sbjct: 907  SAARPNNNLNQQQQHHHQ-SHHHPSL-IPPTTTSIRSPTLGPPSSQD 951


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,351,842
Number of Sequences: 27780
Number of extensions: 236464
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)