Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6194
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    27   0.18 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.7  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 412 SHSECWGRILEFLMR--PKHACAEF 344
           + +E W R+   L+   PKHACAE+
Sbjct: 235 TETETWTRVFNTLVDLVPKHACAEY 259


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
 Frame = -2

Query: 162 LVVCA*Y----YIIVFNYPLILLTV 100
           L+VC  Y    Y+I F YP++L+ V
Sbjct: 805 LLVCNSYVDASYMIAFAYPIMLIVV 829


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 312 QQQYSKLSSVKNSAHACFGRIKNSKIRPQHS 404
           QQQ  +   V+    A    ++ S+ R QH+
Sbjct: 769 QQQVQQAQQVQQQMQAAMAAVQQSQQRHQHA 799


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  YNPTVNSYLFLINIEEFK 84
           Y+P  ++ L+ +N E+F+
Sbjct: 267 YSPVASTSLYYVNTEQFR 284


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  YNPTVNSYLFLINIEEFK 84
           Y+P  ++ L+ +N E+F+
Sbjct: 267 YSPVASTSLYYVNTEQFR 284


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  YNPTVNSYLFLINIEEFK 84
           Y+P  ++ L+ +N E+F+
Sbjct: 267 YSPVASTSLYYVNTEQFR 284


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 346 TPRMRASVASKILKYVPNT 402
           +P    SVA K+ K +PN+
Sbjct: 158 SPEAHISVAQKLQKEIPNS 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,250
Number of Sequences: 438
Number of extensions: 3263
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)