Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6189
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402...    30   2.0  
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329           30   2.0  
10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190           29   4.6  
02_03_0101 + 15233783-15234601                                         28   6.1  
01_02_0021 + 10281611-10281997                                         28   8.1  

>11_08_0005 +
           27536091-27536761,27539697-27539890,27540097-27540255,
           27540385-27541493
          Length = 710

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 594 HKKQNHGDKMPKNLLLFKKIIPEI-NFAKRNLT 689
           H+   HGD  P N+LL  K+IP++ +F    LT
Sbjct: 547 HQSIVHGDVKPANILLDDKLIPKVSDFGSAELT 579


>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
          Length = 264

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 573 IIYHKALCFICLLCSLVSTTAFALNITRKLHKICKEKTK 457
           I+Y K +C   +LCSL+ T     N    L +  KEKT+
Sbjct: 113 IVYLKIICMPIILCSLLVTCGDISNRDPMLSRYFKEKTQ 151


>10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190
          Length = 695

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 609 HGDKMPKNLLLFKKIIPEINF 671
           HGD  P N+LL  K IP+I++
Sbjct: 542 HGDVKPANILLTDKFIPKISY 562


>02_03_0101 + 15233783-15234601
          Length = 272

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -3

Query: 225 RKWKTDPVHCSTRGTVHFSXXXXXXXXKT-SCDHLTGCKEKKIC 97
           R WK D VHC T+G   ++         T S  H T C    IC
Sbjct: 86  RYWKRDDVHCLTKGWGCYAREKGLRAGDTVSFFHSTACGRFFIC 129


>01_02_0021 + 10281611-10281997
          Length = 128

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 16  CRQHPPTCQLSSRVRLVHNLIVQKLQRTNFF 108
           CR HP  C   S V +V  ++ + L+  NFF
Sbjct: 79  CRDHPHRCGKLSAVLVVKAILAEALRCFNFF 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,753
Number of Sequences: 37544
Number of extensions: 271052
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)