Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6189
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine rece...    32   0.34 
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    28   5.5  
U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical p...    27   9.6  

>U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 33 protein.
          Length = 327

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 618 CLRDSVFYVSLSSQNIIYHKALCFICLLCSLVSTTAFALNITRKLHKICKEKTKAE 451
           C R+S   + L +++II + A+C   ++CSL+           K + I  E TK E
Sbjct: 171 CFRESDVVLDLKTEHIIPYLAICLTSIVCSLLLIIYVKKTQKTKTYDIESEYTKKE 226


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 583 VSKHYIS*GTVFYLFTVFTCFHYSFCF 503
           ++KH+     ++YL  V TC    FCF
Sbjct: 63  ITKHFYHMVIIYYLIFVLTCISVFFCF 89


>U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical
           protein C32B5.14 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 31  PTCQLSSRVRLVHNLIVQKLQR 96
           P C++ +  RLVHNL +QK QR
Sbjct: 114 PECEMET-ARLVHNLTLQKSQR 134


>U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical
           protein F41G3.2 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +2

Query: 215 FHLRKRNVVASKRVPNLKFQISSDRRKIRYIKILVLIERLRSVG*NRSLFKLRIGTLTAQ 394
           FHL  ++   S R+PNL    ++  R ++       +++ R++      FK  +G  T +
Sbjct: 237 FHLISKDPTTSIRIPNLCTLQNNTTRLVKLGSRRWFLKKRRTISKREESFKKSVGRNTVR 296

Query: 395 F 397
           F
Sbjct: 297 F 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,687,305
Number of Sequences: 27780
Number of extensions: 279539
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)