Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6183
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    49   4e-06
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    48   6e-06
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    48   6e-06
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    48   8e-06
Z82273-1|CAB54978.2|  565|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z82263-7|CAJ76937.1|  565|Caenorhabditis elegans Hypothetical pr...    31   0.78 
AF039050-5|AAC47938.1|  499|Caenorhabditis elegans Cytochrome p4...    29   4.2  
AF100669-2|AAK39264.1|  546|Caenorhabditis elegans Hypothetical ...    28   5.5  
AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical...    28   7.3  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +2

Query: 410 SNRPISLLMSLGKLYERLLYNRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVG 589
           S RPISLL  + KL E+ +  R+++ + S       Q GF+  HS    V ++T  I+ G
Sbjct: 404 SYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEHSTTTAVIQVTNDIIGG 459

Query: 590 LNRPKPLYTGAL-FFDVAKAFDKV 658
           LN   P     +   D+  AFDKV
Sbjct: 460 LNMKNPPERAIMACLDLRAAFDKV 483


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 31/90 (34%), Positives = 45/90 (50%)
 Frame = +2

Query: 404 IRSNRPISLLMSLGKLYERLLYNRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHIL 583
           + + RPI LL  L K++ + L NR+R  +     +  EQ GFR + S +  +H L   + 
Sbjct: 620 LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLE 677

Query: 584 VGLNRPKPLYTGALFFDVAKAFDKVWHNGL 673
           VG     PL    +F D  KAFD V H  +
Sbjct: 678 VGREYQIPL--TLVFIDFKKAFDSVEHQAI 705


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 31/90 (34%), Positives = 45/90 (50%)
 Frame = +2

Query: 404 IRSNRPISLLMSLGKLYERLLYNRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHIL 583
           + + RPI LL  L K++ + L NR+R  +     +  EQ GFR + S +  +H L   + 
Sbjct: 359 LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLE 416

Query: 584 VGLNRPKPLYTGALFFDVAKAFDKVWHNGL 673
           VG     PL    +F D  KAFD V H  +
Sbjct: 417 VGREYQIPL--TLVFIDFKKAFDSVEHQAI 444


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 31/90 (34%), Positives = 45/90 (50%)
 Frame = +2

Query: 404 IRSNRPISLLMSLGKLYERLLYNRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHIL 583
           + + RPI LL  L K++ + L NR+R  +     +  EQ GFR + S +  +H L   + 
Sbjct: 449 LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLE 506

Query: 584 VGLNRPKPLYTGALFFDVAKAFDKVWHNGL 673
           VG     PL    +F D  KAFD V H  +
Sbjct: 507 VGREYQIPL--TLVFIDFKKAFDTVEHQAI 534


>Z82273-1|CAB54978.2|  565|Caenorhabditis elegans Hypothetical
           protein F56F12.1 protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 388 SQIPYNTFQPP----DQPPHVSRQTV*ASALQSSQRLRLIQGHSHR*TIRIPY 534
           SQ+ +N  +PP     +PPH + Q + A  LQSS+     Q  S + + RIPY
Sbjct: 132 SQVKHNESKPPVPPSTKPPHSAAQALQAQVLQSSKAPSQPQ-QSQKTSYRIPY 183


>Z82263-7|CAJ76937.1|  565|Caenorhabditis elegans Hypothetical
           protein F56F12.1 protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 388 SQIPYNTFQPP----DQPPHVSRQTV*ASALQSSQRLRLIQGHSHR*TIRIPY 534
           SQ+ +N  +PP     +PPH + Q + A  LQSS+     Q  S + + RIPY
Sbjct: 132 SQVKHNESKPPVPPSTKPPHSAAQALQAQVLQSSKAPSQPQ-QSQKTSYRIPY 183


>AF039050-5|AAC47938.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 34A8 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 288 ACPSVLCA*CEFFNVLDRVEVNSNLYAVGTTPLVTNTIQYVPTAR 422
           ACP    A  E F +   + ++ +L  VGT P +  T  + P  R
Sbjct: 442 ACPGESLARAELFLITGNMILDYDLEPVGTLPKIETTTPFAPMKR 486


>AF100669-2|AAK39264.1|  546|Caenorhabditis elegans Hypothetical
           protein R11E3.2 protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 160 TLTVGSGLALLLALMKFMGDSNHSPLGGPYARLPTRAIKNSYSLARLSCVLSASF 324
           +L  G   +  +A+++ +GD N         R+PT  +   + +  + C+LS+SF
Sbjct: 282 SLLCGFIASSFVAMIESIGDYNLCAKLSKQGRIPTSNLNRGFIVEGIGCMLSSSF 336


>AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1A.17 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 422 ISLLMSLGKLYERLLYNRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRP 601
           I++L SLG L E   ++ LRDF +       E    R N +    V  +  H+L  L   
Sbjct: 227 IAMLHSLGALAELEKFDSLRDFFTEANFSAIENMLNRWNDNRGNVVLSILVHLLNCLETV 286

Query: 602 KPLY 613
            PL+
Sbjct: 287 NPLH 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,192
Number of Sequences: 27780
Number of extensions: 332890
Number of successful extensions: 791
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)