Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6182
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    28   1.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   3.1  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.5  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    25   9.6  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   9.6  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 286 SSLTYDHPHRANDQITIHTLLKICRTFMLPIS---DALDYVHATVFFYKFD 143
           S L    P  +N Q T +T L   R+   P+    D  DY+H T F   +D
Sbjct: 577 SELLNRRPMSSNMQTTDNTGLDPLRSASAPVDSTFDLFDYIHPTTFTLNYD 627


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 331 LRKSDALDKILFFSFSSLTYDHPHRANDQITIHTLLKICRTFMLP 197
           L KSDALD +L   FS+    HP +A    +I  L  +   F +P
Sbjct: 119 LAKSDALDYVLEGLFSAARVKHPKQA--VASIKELNSLLENFGIP 161


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 256 ANDQITIHTLLKICRTFMLPISDALDYVHATVFFYKFDHL*PLPPPMKRYTL 101
           +N+   +H L+++   F L I   ++     V F KF+       PMK Y L
Sbjct: 172 SNESSFLHYLVEVWSIFYLEILPYIEATFLPVTFAKFEIAQLFEEPMKTYWL 223


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -2

Query: 219 YVGHLCYQYLTRSIMSMQQYFFTNLIIYSRFPHQ*KGI--HYMTFFSYYH 76
           Y+   CY Y T S++S     ++    Y R  +  K I   Y  F  YY+
Sbjct: 21  YLMRCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELFIIYYY 70


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 336 TP*ENLTRSIKSYFFHFLP 280
           TP ++L R I S F H+LP
Sbjct: 122 TPFQDLARRIASTFLHYLP 140


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 634 HHKYILSYFEPTAKFK*CS 578
           H KY LS + P+ KF+ CS
Sbjct: 96  HLKYYLSLYLPSCKFEICS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,054
Number of Sequences: 5004
Number of extensions: 56640
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)