Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6181
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.6  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   6.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   8.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -1

Query: 586 CTICSFPLQTLCRLSIAQLSQNNLPSHPHLYQLLLS*ETYRANAGLXHHHLESTGLQAHL 407
           C  CSFP  T   +S A  S    P  P+          + AN G   HH     +Q+ L
Sbjct: 363 CFRCSFPGPT--HVSAATGSNTFSPDFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDL 420

Query: 406 QH 401
           QH
Sbjct: 421 QH 422


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 569 PTPDTLSSFDSTAVTEQSSIT 507
           PTP T  SF+S+   E SS+T
Sbjct: 218 PTPSTQGSFNSSRTIELSSVT 238


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 98   SLIFLYCEEWVQGVAGIHQALLEHSSQHLL 187
            S ++LY  EW+  +      LL   S+HLL
Sbjct: 1115 SQVYLYLREWINALFDRFTFLLGKESEHLL 1144


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 293  LVLANNSEPHC 261
            +VLAN+SEPHC
Sbjct: 2113 MVLANDSEPHC 2123


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 289 TRDRMTVYRRMKSQSVSWSIDCDLVTPK 372
           + D  T  ++ K +SVSW  D DLV  K
Sbjct: 493 SNDEKTGNKKRKKKSVSWKPDNDLVQVK 520


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -3

Query: 566  TPDTLSSFDSTAV---TEQSSITPTPLSVASLIRDIQSKCGS 450
            +P+T+++  +T     T  ++ TPTP + ++   ++ ++CGS
Sbjct: 928  SPNTVTTTKATTTFTPTPTTTTTPTPTTTSATSTNVIAQCGS 969


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -3

Query: 569 PTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSXTPSPGIHR----PPSTSST 402
           PT  + S F S+  T  S I+ +  S+ S    + S   S T SP          STSST
Sbjct: 546 PTSSS-SDFSSSITTISSGISSS--SIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSST 602

Query: 401 FSIGNNS 381
           FS  + S
Sbjct: 603 FSSASTS 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,850
Number of Sequences: 5004
Number of extensions: 62803
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)