Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6181
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 50 1e-06
AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical... 50 1e-06
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 47 1e-05
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 31 0.87
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 30 1.5
Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 30 2.0
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.6
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 29 2.6
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 4.6
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 29 4.6
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 4.6
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 4.6
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 28 6.1
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 6.1
U58757-14|AAZ82850.1| 233|Caenorhabditis elegans Hypothetical p... 28 6.1
Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical pr... 28 8.1
U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeo... 28 8.1
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 50.4 bits (115), Expect = 1e-06
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Frame = +1
Query: 130 AGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMT 306
+G+ +HS GLV A P + SI L +LEA G ++ G++ LA R+
Sbjct: 67 SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 126
Query: 307 VYRRMKSQSVSWSID-CD--LVTPKKCHELFPMLNVEDVLGGLWIPGDGVXDPHLLCMSL 477
+R+ ++ D C L+TP + EL P ++ +LG L DG L +L
Sbjct: 127 EFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQAL 186
Query: 478 MREATDKGVGVME 516
+ A + G V++
Sbjct: 187 VVGAKNGGAQVID 199
>AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical
protein Y37E3.17b protein.
Length = 837
Score = 50.4 bits (115), Expect = 1e-06
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Frame = +1
Query: 130 AGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMT 306
+G+ +HS GLV A P + SI L +LEA G ++ G++ LA R+
Sbjct: 74 SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 133
Query: 307 VYRRMKSQSVSWSID-CD--LVTPKKCHELFPMLNVEDVLGGLWIPGDGVXDPHLLCMSL 477
+R+ ++ D C L+TP + EL P ++ +LG L DG L +L
Sbjct: 134 EFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQAL 193
Query: 478 MREATDKGVGVME 516
+ A + G V++
Sbjct: 194 VVGAKNGGAQVID 206
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 47.2 bits (107), Expect = 1e-05
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Frame = +1
Query: 130 AGSRWHSSGLVGA--FKPTLAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRDRM 303
+G+ S+GLV + F + +AQ+S+ L L + + +CG LA +
Sbjct: 58 SGATGLSAGLVSSPIFWQDTSLQAIAQASLDLYSHLATTCK-FRYIKCGRTYLASSMANE 116
Query: 304 TVYRRMKSQSVSWSIDCDLVT-PKKCHELFPMLNVEDVLGGLWIPGDGVXDPHLLCMSLM 480
+ RRM S+ V + +L+ + E +P L EDV L+ P D DP LC L
Sbjct: 117 ILLRRMYSRGVVHNDKVELLDCQSEMLERWPFLQTEDVQLALFSPEDVALDPVALCQHLA 176
Query: 481 REATDKGVGVMEDCSVTAVLSKDDK-VSGV 567
A D G + E V V D+K V GV
Sbjct: 177 LIAKDYGALIYESNPVLEVHIGDEKQVYGV 206
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 569 PTPDTLSSFDSTAVTEQSSIT-PTPLSVASLIRDIQSKCGSXTPSPGIHRPPSTSSTFSI 393
P P + + A EQ+ + P P VA+ D++ CGS P+P P +T S +
Sbjct: 232 PAPAAAAPAPADAPVEQAPVAVPAPAPVAA--PDVE--CGSAAPAPAAAAPAATDSGYRS 287
Query: 392 GNNS 381
NS
Sbjct: 288 KRNS 291
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 563 PDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGS-XTPSPGIHRPPSTSST 402
P T+ + STAVT+ S++ P +V ++ + +K + T SP + P+T T
Sbjct: 318 PSTVVTVPSTAVTKPSTVVTAPSTVVTVPSTVVTKPNTVVTSSPTVATTPTTVVT 372
>Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical
protein M04B2.4 protein.
Length = 527
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 268 GSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDV-LGGLWIPGDG 444
G L LA+T + + + R + L++ + + +P +NV+DV L L + +G
Sbjct: 187 GYLRLAKTDEEVEMMRSAWKVQIERGAKVQLLSKDELTKRYPYMNVDDVLLASLGVENEG 246
Query: 445 VXDPHLLCMSLMRE 486
D L +S +RE
Sbjct: 247 TIDTWQL-LSAIRE 259
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -3
Query: 566 TPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSXTPSPGIHRPPSTSSTFSIGN 387
TP + DS + S+ P+ ++ I K TPSP + + PS+SS+ S +
Sbjct: 333 TPKRPQTNDSVSTRRSSTTWEVPIRPTTMNSQISRK---RTPSPVVRKAPSSSSSNSTSS 389
Query: 386 NS 381
+S
Sbjct: 390 SS 391
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -3
Query: 557 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSXTPSPGIHRPPSTSSTFSIG 390
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 389 NNS*HF-FGVTKSQSMLHDT 333
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -3
Query: 557 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSXTPSPGIHRPPSTSSTFSIG 390
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 389 NNS*HF-FGVTKSQSMLHDT 333
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 569 PTPDTLSSFDSTAVTEQSSITPTPLSVA 486
P P T+SS + A T+ S TPTP VA
Sbjct: 805 PEPPTISSTFTPAATQASPATPTPQHVA 832
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 313 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 417
++MKS + S SID L +P C P+ N EDV+
Sbjct: 127 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 159
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 313 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 417
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 313 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 417
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 313 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 417
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 443 PSPGIHRPPSTSSTFSIGNNS*HFFGV 363
PS I PP+TS+ + GNNS ++ GV
Sbjct: 55 PSQKILPPPTTSAPSNSGNNSINYMGV 81
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 443 PSPGIHRPPSTSSTFSIGNNS*HFFGV 363
PS I PP+TS+ + GNNS ++ GV
Sbjct: 116 PSQKILPPPTTSAPSNSGNNSINYMGV 142
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 443 PSPGIHRPPSTSSTFSIGNNS*HFFGV 363
PS I PP+TS+ + GNNS ++ GV
Sbjct: 80 PSQKILPPPTTSAPSNSGNNSINYMGV 106
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -3
Query: 539 STAVTEQSSI----TPTPLSVASLIRDIQSKCGSXTPSPGIHRPPSTSSTFSIGNNS*HF 372
STAVT SS+ +P P S+++ I S S +PS P S+ +I ++S F
Sbjct: 20 STAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTF 79
Query: 371 -FGVTKSQSMLHDT 333
V S S + T
Sbjct: 80 PSSVASSPSTVGST 93
>U58757-14|AAZ82850.1| 233|Caenorhabditis elegans Hypothetical
protein C01B10.11 protein.
Length = 233
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -1
Query: 667 LSPAVVPTVRTCLAPKARTVDKVITLDCTICSFPLQTLCRLSIAQLS 527
L P ++P+ + ++ D V D T+C FP L ++ S
Sbjct: 162 LLPTLIPSTQKMISYTKTDFDSVADFDSTVCGFPRDAYLTLLLSSSS 208
>Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 507 CDGRLFCDSCAIERRQSVWSGKLQMVQSSVITLSTVRAFGARQVRTVGTTAGESTPYYHV 686
CDG+ CD E+ + + + +S+ T + V++ + T TT TP H
Sbjct: 168 CDGKFDCDGGDDEKNCTKSNATTTTISNSLSTTTVVKSTTTLPISTTTTTTTTITP-KHT 226
Query: 687 N 689
N
Sbjct: 227 N 227
>Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 507 CDGRLFCDSCAIERRQSVWSGKLQMVQSSVITLSTVRAFGARQVRTVGTTAGESTPYYHV 686
CDG+ CD E+ + + + +S+ T + V++ + T TT TP H
Sbjct: 168 CDGKFDCDGGDDEKNCTKSNATTTTISNSLSTTTVVKSTTTLPISTTTTTTTTITP-KHT 226
Query: 687 N 689
N
Sbjct: 227 N 227
>U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform c protein.
Length = 417
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 554 LSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSXTPSPGIHRPPSTSST 402
+S ++ + I P+P + SL+ S TP +RPP S T
Sbjct: 230 ISGASNSGLLSSPLIAPSPTLLQSLMNTPTQPTASLTPKKAENRPPVVSQT 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,736,003
Number of Sequences: 27780
Number of extensions: 372160
Number of successful extensions: 1029
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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