Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6180
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   4.1  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   5.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   7.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   7.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.5  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   9.5  
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 243 STARCISNHPMKFVEAQDRWREMDNVSKRWKLIYRAPMDN 362
           S  + +S++P+ F   ++  +   N S RW L+     DN
Sbjct: 78  SMLQLLSDYPLAFNSTENNQKLQTNPSARWSLLDSMDFDN 117


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 524 IPWQLYSIPCCCESIAFKIRNTTLPRWRRL 613
           + W +  +PC CE+I    R+  L   RRL
Sbjct: 598 LEWPVVFLPCLCENIIPHSRSDDLDEERRL 627


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 377  YNLSYIYYWYHWTQWL 424
            YN  Y Y  Y+W  WL
Sbjct: 1211 YNFEYEYITYNWPHWL 1226


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 751 PCFSPNENLPIAPMSRQNVGFNFLNSFK*NLCFLSNYI 638
           PC S N NLP    S  +V  + L  F  N    ++YI
Sbjct: 628 PCISTNPNLPALVGSLDSVNLHHLLGFIQNTYSTTSYI 665


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 182 CKYELFTCNNVDW 220
           C+ ELF C N DW
Sbjct: 601 CQSELFNCENSDW 613


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 789 VVWCFENSFQAKSHAFLLMKICP 721
           +++CF +SF      F +M ICP
Sbjct: 257 IIFCFLSSFIITGVFFFIMSICP 279


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 362 IVHWRSVY*FPSFRNVIHFSPSILS 288
           +VHW     FP   ++I F P  +S
Sbjct: 479 VVHWEEACGFPDVTHIIDFGPGGIS 503


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 513 LLDRWL*PHYLPVVLDYSNQLGRKQTFH 430
           LL R++ P  +P +LDY   L +   FH
Sbjct: 315 LLSRFISPSAVPDLLDYERILNQMNKFH 342


>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 367 RTLSIGALYINFHRLETLSISLH 299
           ++ S    Y+ FH L T+++SLH
Sbjct: 36  KSWSTACTYLMFHSLATMAVSLH 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,888
Number of Sequences: 5004
Number of extensions: 74780
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)