Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6180
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0061 - 11043183-11043417,11043556-11043796,11043923-110441...    29   3.3  
11_08_0084 + 28260647-28262575                                         28   7.6  
02_05_1228 + 35086576-35087139,35089125-35089268,35090436-350906...    28   7.6  

>06_02_0061 -
           11043183-11043417,11043556-11043796,11043923-11044106,
           11044228-11044437,11045135-11045423,11045787-11045923,
           11046019-11046137,11046405-11046518,11046710-11046803
          Length = 540

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 438 FVFDQADLNNPVLLGDNVVIANDPIECIV 524
           ++F   +LN  +LLG+ ++ A D  ECI+
Sbjct: 325 WLFRSCELNGRILLGEGLISAEDMEECII 353


>11_08_0084 + 28260647-28262575
          Length = 642

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 SQRSNRM-YCIPWQLYSIPCCCESIAFKIRNTTL 595
           SQR++ + +   ++LY   CCC+ +AF   N T+
Sbjct: 328 SQRTSVVDFLKAYRLYMEACCCKKVAFVFSNKTI 361


>02_05_1228 +
           35086576-35087139,35089125-35089268,35090436-35090600,
           35090722-35090796,35091468-35091671
          Length = 383

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 535 LPRYTIHSIGSLAITTLSPSSTGLFKSAWSKTNIP 431
           LP Y+ + +G   +TT SP ++G+    ++K NIP
Sbjct: 194 LPLYSTYGLG---LTTWSPLASGVLTGKYAKGNIP 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,523,290
Number of Sequences: 37544
Number of extensions: 405563
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)