Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6179
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438...    30   2.2  
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    29   3.9  
04_01_0523 - 6875349-6875444,6876284-6876346,6876431-6876474,687...    28   6.9  
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    28   6.9  
11_04_0327 + 16420327-16420473,16420618-16420663,16421561-164217...    28   9.1  

>03_01_0004 +
           41829-42203,42376-42474,42699-42743,43604-43741,
           43852-44157,44779-45689,45826-46093
          Length = 713

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 695 FPTETHYCFTAEKGRVVVTTRADSTRSPTTSKNTPT 588
           F   +H  F   K RV    RAD T+    +K TPT
Sbjct: 650 FADSSHKIFDLSKRRVYQVVRADGTKVAADNKGTPT 685


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 703 PPPSQPKRITASRQKKAG 650
           PPP QPKR+   R+K AG
Sbjct: 83  PPPPQPKRLQGGRKKGAG 100


>04_01_0523 -
           6875349-6875444,6876284-6876346,6876431-6876474,
           6876578-6876707
          Length = 110

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = -1

Query: 637 LARTPQEVLPPVKIHLHTTYS*L*YI*AFLKIIAQ*TLASVPFFNILFRLIY*FITTF 464
           LA + +E+LPP +     TYS +  + + L + +     SVPFF ++  L+  F+T F
Sbjct: 4   LALSMEELLPPNR----QTYSNIVMLRSALVLSSLIVALSVPFFGLVMSLVGSFLTMF 57


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 522 PLSHFLIFCSG*YISSLLLF-INCVSSITTLLIRKEKNRY 406
           P +   I C       +LLF I CVSS  T ++RK ++RY
Sbjct: 452 PANQDEIVCVSRQTDMVLLFDIGCVSSTPTEILRKGRSRY 491


>11_04_0327 +
           16420327-16420473,16420618-16420663,16421561-16421702,
           16423700-16423779,16424487-16424677
          Length = 201

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 725 LSIVTTAAPPFPTETHYCFTAEKGRVVVTTRADSTRSPTTSKN 597
           LS    AAP F   T   FT E+ R ++  R   T+    SKN
Sbjct: 135 LSSAEEAAPGFSGHTLQTFTVERLRALLRQRGLMTKGKKASKN 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,801,527
Number of Sequences: 37544
Number of extensions: 369558
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)