Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6179
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    31   1.1  
AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   6.1  
Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 713 TTAAPPFPTETHYCFTAEKGRVVVTTRADSTRSPTTSKNTPT 588
           TT  P   T T    T E      TT  ++T +PTT+  TPT
Sbjct: 121 TTTTPTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPT 162



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 713 TTAAPPFPTETHYCFTAEKGRVVVTTRADSTRSPTTSKNTPT 588
           TT   P  T T    T+E      TT   +T  PTT+  TPT
Sbjct: 236 TTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPT 277



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 713 TTAAPPFPTETHYCFTAEKGRVVVTTRADSTRSPTTSKNTPT 588
           TT   P  T T    T        TT   +T +PTT+  TPT
Sbjct: 163 TTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPT 204


>Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.14 protein.
          Length = 354

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 8/194 (4%)
 Frame = -2

Query: 597 YTYILHTHSYNIYEHFSKLLHNRL*PLSHFLIFCSG*YISSLLLFINCVSSITTLLIRKE 418
           Y Y+L   S+++ ++  ++   +   + HFLIF S   IS  L  IN  S+  T   R+ 
Sbjct: 126 YVYLLEGRSHSLLQNKFRIQSTKRRIIYHFLIFLSN-GISLTLFLINVPSNQKTAK-REA 183

Query: 417 KNRY--KYNEIFSLKIYII----NQLQPVV*KVQCP--NLNILPNHRSLVEWTWALYK*K 262
              Y     E F   IYI+    N L  V+  V  P   LN L  H     W    Y   
Sbjct: 184 LTMYPCPTEEFFIFPIYILISNTNNLHLVI-YVYIPFFALNTLA-HFLFHIWCTVYY--- 238

Query: 261 ILFIYSHKSQFILKHPF*H*FIIKFLINDFNLSRKKFHLETPVFVTIILKKYENRLMQLY 82
            L+I   KS  +    +   F++  L+  F L          V V++ L +Y   LM + 
Sbjct: 239 -LYIAPPKSVSMATQLYQRNFLVGTLLQIFTLFSFMTLPVILVAVSLYLNRYSQELMNVA 297

Query: 81  FRIMVALAGLASVL 40
               +AL G+   +
Sbjct: 298 VD-CIALHGIVECI 310


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 713 TTAAPPFPTETHYCF-TAEKGRVVVTTRADSTRSPTTSKNTPT 588
           TT     P+ T     T+    VV TT   ST  PTTS +TPT
Sbjct: 267 TTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPT 309


>AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical
           protein T28C12.5 protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 591 RCIFTGGRTSCGVRASSYHHPAFFCREAVMRFGWE 695
           R I  GG + C    +S HH   +C++   R GW+
Sbjct: 202 RKIVMGGNSYCHWATTSNHHIREYCKKWAKRLGWK 236


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 713 TTAAPPFPTETHYCFTAEKGRVVVTTRADSTRSPTTSKNTPT 588
           TT   P P++     T  K  VV+TT   ++  PTTS +T T
Sbjct: 395 TTTTTPKPSQKPTT-TTTKSPVVITTTTKTSPKPTTSPSTTT 435


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 713 TTAAPPFPTETHYCFTAEKGRVVVTTRADSTRSPTTSKNTPT 588
           TT   P  T T    T        TT   +T +PTT+  TPT
Sbjct: 90  TTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPT 131


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 713 TTAAPPFPTETHYCFTAEKGRVVVTTRADSTRSPTTSKNTPT 588
           T+ AP    +T Y  T      V TT   +T  PTT+  TPT
Sbjct: 231 TSTAPHIKYDTSY--TCASTTTVSTTSTVTTTKPTTTTTTPT 270


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 722  SIVTTAAPPFPTETHYCFTAEKGRV 648
            S++T A PP   E +YCF  +  RV
Sbjct: 926  SMLTNAIPPIMVEDNYCFVVDGERV 950


>Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.7 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 153 FHLETPVFVTIILKKYENRLMQLYFRIMVALAGLAS 46
           FH+ T   + ++ +K +N++   YFR  + + G A+
Sbjct: 209 FHIATDASLKVLNEKLDNKITMRYFRPSIYIEGCAA 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,888,009
Number of Sequences: 27780
Number of extensions: 360113
Number of successful extensions: 926
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)