Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6178
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   2.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   7.7  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 171 YQIKHTVL-LFSN-HFAA*FSVHTFKIFPVIYMSLLPCANQAW 49
           +Q+    L L+SN +F +  S +   + P+IY SL   AN+ W
Sbjct: 520 FQVAERALCLWSNEYFTSLVSQNVVTLLPIIYPSLYKTANEHW 562


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 411 SHSSVFYLVIVEHCFKKQ*NMIDEQYYDYI*WNTYIHIR*TRYVKYYVKIT--LI*LI-- 578
           + S  F++++ E C     NM+  Q  D   W+    I    + K + K T   I L   
Sbjct: 420 TRSQPFWIIVSESCIILCDNMLSMQPADVFIWDVDFEITRKNFRKAHSKDTNEKIRLSHH 479

Query: 579 SFIIKHHRRIHKMLATKNKYL 641
           SF IK+ +++ K+     ++L
Sbjct: 480 SFKIKNRQKVMKLSVRSGRWL 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,024
Number of Sequences: 5004
Number of extensions: 61187
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)