Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6178
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    29   4.2  
Z74033-5|CAF31473.1|  333|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 136 PLCSLVFCTHLQNISCHIHVPITLC 62
           PL S +FC+ L N    IH+P  LC
Sbjct: 202 PLLSTLFCSSLPNYIGRIHLPSMLC 226


>Z74033-5|CAF31473.1|  333|Caenorhabditis elegans Hypothetical
           protein F38B7.7 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 647 VI*IF-VLCSKHLMYSSVMFNYE*DKLDECDFNVIFDIPSLSNMYVCVPLYV 495
           VI IF ++C+  ++Y  + FN   +K +   FN+I    SLSN+Y+    ++
Sbjct: 26  VIGIFGIVCNSSIVY--IFFN---EKSERTSFNLICVYRSLSNIYILATTFI 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,979,678
Number of Sequences: 27780
Number of extensions: 335280
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)