Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6176
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112... 31 1.1
07_03_0504 - 18842442-18844668,18845418-18845428 30 1.9
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 3.2
06_02_0067 - 11087664-11087786,11087954-11088000,11088217-110883... 28 5.6
04_01_0341 - 4442727-4445597 28 5.6
01_01_0529 + 3874865-3876285,3876352-3876367 28 5.6
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 28 7.5
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 27 9.9
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073... 27 9.9
01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,528... 27 9.9
>11_04_0137 +
13909204-13909315,13910002-13910999,13911058-13911267,
13911522-13912056,13912154-13912461
Length = 720
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 408 LLGKTTTIDAATAIVHVCVSEYLLLEGGQRSDVWR 304
L+ KTT +D + H V E LEGGQ +VWR
Sbjct: 74 LVQKTTCVDRSGESSHAVVEE-TPLEGGQAENVWR 107
>07_03_0504 - 18842442-18844668,18845418-18845428
Length = 745
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -1
Query: 633 LSKLIKNXLTTYQSCTNHKYKSVLLKKMDARRHGQRTSHRISSVQKLRRILPNVPVGCDN 454
L ++++ T Q C +K +L KK+ +++ +S + L IL +P+G
Sbjct: 88 LQQIVQQLTTDNQDCPRNKVLEILEKKLKEKKYLLVIDGEVSGTE-LNNILSTLPIGHAG 146
Query: 453 QRV 445
R+
Sbjct: 147 SRI 149
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 22 QRIDIISKNIEDLKN 66
QRID+ISKNIEDL++
Sbjct: 584 QRIDMISKNIEDLRD 598
>06_02_0067 -
11087664-11087786,11087954-11088000,11088217-11088384,
11089278-11089491,11091102-11091275
Length = 241
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 441 VLWQVFVSHNRLLGKTTTIDAATAIVHVCVSEYLLLEGG 325
V W+ F ++ TI T+ +C Y+LL GG
Sbjct: 191 VAWKHFQAYTTPFAPPLTISCVTSAAMICFYSYVLLAGG 229
>04_01_0341 - 4442727-4445597
Length = 956
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 203 IANILWTTQNSKRKARPRSPTLF*NDGSILVFHCRQTS----LRWPPSNNKYSETQTCTI 370
+AN +W+ R A PR + F SI + +C + + L WP S++ +T I
Sbjct: 772 MANCIWSRG---RTASPRDDSSFAKLRSIHLHYCPRLTFVLPLSWPTSDSHLPSLETLHI 828
Query: 371 AVAASIVVVFP 403
+ + +FP
Sbjct: 829 VYCSELRQIFP 839
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 461 VTINEYLCCGKCLFPI-IDYLEKRRQLTPRQQLYMFVFLSICYWKEASG 318
V + E + KC PI IDY + + L L +CYWK ASG
Sbjct: 145 VVLLEIISTAKCPRPIDIDYFVYKAKPNGEPSLTR---LPVCYWKGASG 190
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 218 WTTQN-SKRKARPRSPTLF*NDGSILVFHCRQTSLRWPPSNN 340
W Q+ K +P + F +DGS+L W P NN
Sbjct: 464 WRCQSVGSYKNKPMTAATFSSDGSVLAVAAENVVTLWDPDNN 505
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 350 LSICYWKEASGATFGDNEKLIWIHRFRIAWESA 252
L C ++ G G + W HRFRIA E A
Sbjct: 554 LDDCLFRRGGGGGGGGGPVIPWQHRFRIAAEIA 586
>03_06_0557 +
34704990-34705400,34706271-34706485,34707142-34707367,
34707447-34707532,34708030-34708121,34708232-34708471,
34709455-34709750
Length = 521
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/66 (31%), Positives = 25/66 (37%)
Frame = +2
Query: 167 RTFLQCVCCPSSIANILWTTQNSKRKARPRSPTLF*NDGSILVFHCRQTSLRWPPSNNKY 346
+ F C PSS ++ W P PTL D L FHC T PS +
Sbjct: 296 KAFKSCDLLPSSWMSVAWYPIYRI----PTGPTLEDLDACFLTFHCLAT-----PSKDSD 346
Query: 347 SETQTC 364
S T C
Sbjct: 347 STTPAC 352
>01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,
5288913-5289060,5289537-5289696,5290021-5290166,
5290963-5291191,5291901-5292123,5292253-5292401,
5293501-5293670,5294188-5294259,5294363-5294443,
5296180-5296311,5296381-5296468,5296841-5297054,
5297501-5297684,5298069-5298152,5299002-5299131,
5299280-5299650,5299684-5299967,5300932-5301247
Length = 1233
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 633 LSKLIKNXLTTYQSCTNHKYKSVLLKKMDA 544
L K+IK + Q HKY S+L+ KMD+
Sbjct: 1191 LRKIIKKDHRSVQCDNGHKYASLLVCKMDS 1220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,005
Number of Sequences: 37544
Number of extensions: 334399
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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