Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6173
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0348 - 3076395-3078236                                           31   0.99 
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701...    29   4.0  
10_07_0019 + 11931519-11932310                                         28   5.3  
08_02_1316 - 26088302-26088405,26089203-26089317                       28   5.3  
12_01_0756 + 6869100-6869327,6869943-6870123,6870233-6870399,687...    27   9.2  
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811...    27   9.2  
03_02_0200 - 6360682-6362517,6362599-6362670                           27   9.2  

>08_01_0348 - 3076395-3078236
          Length = 613

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -2

Query: 304 ITSWSFTMGKLSSTKRVQVSRKN--SLPLQLTI--NFMVSGFTLRISLKRVSFWFLPGPK 137
           + SW+  +  LS +  V+ ++    ++P++ ++  N MVSGF     +     WF   P+
Sbjct: 111 VVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPE 170

Query: 136 KGSS 125
           KG +
Sbjct: 171 KGDA 174


>03_02_0270 -
           7011363-7012302,7013237-7013640,7014264-7014333,
           7014835-7015331,7015959-7016283,7018060-7018292
          Length = 822

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 354 YKFLAQHALRWEEDYVPHEVISNCGAILRGHEQRIQN*SG*KGRRLPNHEHPQR 515
           Y+FL    L W + +V H V+    A L G  + +   +   G  LPN   P R
Sbjct: 586 YQFLRARPLAWRQRFVKHAVL--LAAALGGFAEGMDGLASGAGSGLPNLAPPAR 637


>10_07_0019 + 11931519-11932310
          Length = 263

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 589 RCKRWVCRSSPI*RG 545
           RC+RW CRS P  RG
Sbjct: 39  RCRRWWCRSEPTSRG 53


>08_02_1316 - 26088302-26088405,26089203-26089317
          Length = 72

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 123 QPCSCLEDPIASPXCSCSTRCFLR 52
           +P SC   P ASP C  S  C  R
Sbjct: 7   RPASCRTSPAASPCCEYSAACAFR 30


>12_01_0756 +
           6869100-6869327,6869943-6870123,6870233-6870399,
           6870523-6870605,6870716-6871094
          Length = 345

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 393 DYVPHEVISNCGAI 434
           DYVP EVI+NCG +
Sbjct: 71  DYVPGEVITNCGVM 84


>10_01_0007 -
           79867-79950,80258-80303,80409-80641,80765-80836,
           81135-81230,81506-81607,81684-82349
          Length = 432

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 335 GFEVGDEVHVHHLLVVYN 282
           GF  GD + VHH+LV  N
Sbjct: 159 GFRTGDTIAVHHILVFLN 176


>03_02_0200 - 6360682-6362517,6362599-6362670
          Length = 635

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = -1

Query: 452 LFMPT*DGSTIADYFVGHVVF---FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYN 282
           L + T D   I   FV   +     PP  +  +    P G  G EV       +L V ++
Sbjct: 128 LSVDTPDAVDILAVFVARAIIDDILPPAFLAKQLTCLPEGCKGAEVLHRAEKSYLSVPHH 187

Query: 281 GEAVLNKTGPS 249
           GE +L + G S
Sbjct: 188 GEIILQRWGGS 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,609
Number of Sequences: 37544
Number of extensions: 403029
Number of successful extensions: 1089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)