Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6173
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    31   0.89 
Z82279-1|CAB05259.2|  321|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U64848-9|AAB04887.1|  128|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical...    29   3.6  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical pr...    27   8.3  
EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha 1,2-fuc...    27   8.3  

>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 527 ELVYSLWMFMIGQPPPFLARLILYSLFMP 441
           E +  +W F+ G PPPF   +++   F+P
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVP 179


>Z82279-1|CAB05259.2|  321|Caenorhabditis elegans Hypothetical
           protein R03C1.1 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 147 PVLKRDLRQPCSCLEDPIASPXCSCS 70
           P++ R  RQ C C+++P     CSC+
Sbjct: 27  PIIVRSKRQQCRCVKNPNGGLTCSCA 52


>U64848-9|AAB04887.1|  128|Caenorhabditis elegans Hypothetical
           protein C50E3.3 protein.
          Length = 128

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 345 WGVWV*GWRRGTRPSPLGRLQWGSCPQQNGSKFHAKTLCRSS 220
           WGVW      GTR +  G  +   C    G KF+ KTL   S
Sbjct: 24  WGVWF----DGTRKTKCGPSELTQCNSLKGFKFNDKTLVSKS 61


>AF067613-14|ABA54416.1|  395|Caenorhabditis elegans Hypothetical
           protein F56D6.15 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 295 KR*WTCTSSPTSNPHA--PTGATSSSLNTLLGGKKT 396
           K  + C+  PT  P A  PT  T++++N  LGG++T
Sbjct: 113 KNYFVCSYDPTVQPKATTPTTTTAANVNCPLGGQQT 148


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 271 TASPL*TTKR*WTCTSSPTSNPHAPTGATSS-SLNTLLGGKKTTCPT 408
           T +P  TT    T T++PT+   APT  T++ +  T      TT PT
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPT 218


>Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical
           protein F08A8.5b protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 350 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 234
           P G  G ++ + + +H +      +AV+N T PSF + L
Sbjct: 91  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 129


>Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical
           protein F08A8.5a protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 350 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 234
           P G  G ++ + + +H +      +AV+N T PSF + L
Sbjct: 72  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 110


>EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha
           1,2-fucosyltransferase protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 350 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 234
           P G  G ++ + + +H +      +AV+N T PSF + L
Sbjct: 72  PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,267,048
Number of Sequences: 27780
Number of extensions: 337648
Number of successful extensions: 984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)