Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6173
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.80 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 11  KYYKNLGCLIKNAKRKKHLVEHEQ 82
           KY  N  C I  A  K H++++++
Sbjct: 70  KYLTNYSCFITCALEKSHIIQNDE 93


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 54  ARST*SNMNKXEKQWDLLDNYMVAEDPFLGP-GKN 155
           +R T   +N  EK+ ++LDN +   D  + P G+N
Sbjct: 19  SRCTQGKVNYREKEKEVLDNILGGYDARIRPSGEN 53


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 54  ARST*SNMNKXEKQWDLLDNYMVAEDPFLGP-GKN 155
           +R T   +N  EK+ ++LDN +   D  + P G+N
Sbjct: 19  SRCTQGKVNYREKEKEVLDNILGGYDARIRPSGEN 53


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 81  CSCSTRCFLRLA 46
           C C  RC  RLA
Sbjct: 479 CRCHARCIARLA 490


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 270 DSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVP 404
           +SF I++    + +  +A L           L ++  +WEE Y+P
Sbjct: 194 ESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIP 238


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 560 SHMTRFTNDSNELVYSLWMFMIGQPPPFLA 471
           SH    + D N  VY +W+  +    P LA
Sbjct: 575 SHFINHSCDPNLAVYGVWINCLDPNLPKLA 604


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 81  CSCSTRCFLRLA 46
           C C  RC  RLA
Sbjct: 479 CRCHARCIARLA 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,951
Number of Sequences: 438
Number of extensions: 3985
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)