Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6164
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    27   3.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   3.1  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    27   3.1  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   4.2  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.3  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   7.3  

>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 529 YLNLNEPLNRQNKTNHTTSLLLAFPPKSP 443
           ++ +NEPLN Q  T  T  +  A PPK P
Sbjct: 105 FMKINEPLNGQTST--TAIVQFAPPPKVP 131


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 316 QNRVLELSRKRVEEFTLSMSMGNHLTPSNCLRK*VEVLYVGRH 188
           QNR+ EL  +  E +TL   +G  L   +  +K ++++Y   H
Sbjct: 421 QNRINELPEEERETYTLEEGLG--LPSKSIYKKTIKLVYTSEH 461


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 608 VQRLCFIFPHLYTIPDTN-QSIDHRYYIFKPE 516
           +Q++C +F H  T  DT  Q ++  Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 416 MGFSADIVLSYSIPAVTISAAK 351
           M F A++VL +S+P   + AAK
Sbjct: 518 MSFGAEVVLDFSVPPTHLIAAK 539


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 489 VLFCLFSGSFRFKYVITVVY*LVSIWDSVQMWENETKPL 605
           V FC+ SG F + ++  + Y    I+  + +W+    PL
Sbjct: 192 VAFCVTSGFFSYLFINALYYLFAIIFVPLGIWDIAEYPL 230


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 552 LVSIWDSVQMWENETKPLDVTSRDPSKSPLK 644
           L+S W++V++ + E + +  T++D   +P K
Sbjct: 202 LISFWNTVKLKQKEIQEMFDTNKDAFTNPFK 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,543
Number of Sequences: 5004
Number of extensions: 53909
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)