Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6164
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0355 + 2679561-2680985,2681183-2682295                           28   7.5  
07_01_1014 + 8610060-8610227,8610573-8610950,8611037-8611081           28   7.5  
09_06_0007 + 20155697-20156107                                         27   9.9  

>11_01_0355 + 2679561-2680985,2681183-2682295
          Length = 845

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 523 NLNEPLNRQNKTNHTTSLLLAFPPKSPKTTEGFTA 419
           +L  P+   +  +HT+ L L+F   SP +  G+T+
Sbjct: 478 DLWNPMRNGSAPHHTSELTLSFSSPSPSSISGYTS 512


>07_01_1014 + 8610060-8610227,8610573-8610950,8611037-8611081
          Length = 196

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 379 SLLSPFLPRSSTAFGFDEGNSQNR 308
           S L+P   RS TAF FD  + QNR
Sbjct: 115 SRLAPIKERSRTAFEFDSKHDQNR 138


>09_06_0007 + 20155697-20156107
          Length = 136

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 324 PSSNPNAVLLRGRNGDSRDTVG*YYVSTEAHCAVKP 431
           P++NP+ VLL+ R      TV  YY S  +H  + P
Sbjct: 30  PTANPSTVLLQPRGSAYTLTVHRYYWSAISHSPLYP 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,745
Number of Sequences: 37544
Number of extensions: 332317
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)