Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6164
         (658 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S75888-1|AAD14199.1|   75|Homo sapiens IgH protein.                    30   8.3  
AM079663-1|CAL03809.1|  102|Homo sapiens immunoglobulin heavy ch...    30   8.3  

>S75888-1|AAD14199.1|   75|Homo sapiens IgH protein.
          Length = 75

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +3

Query: 201 YNTSTYFL---RQF--EGVKWLPIDMDSVNSSTRFRDNSKTRFWLFPSSNPNAVLLRGRN 365
           ++ STY++   RQ   +G+ W    +DS  SST + D+ K RF +   +  NAV L+  +
Sbjct: 4   FSISTYWMHWVRQAPGKGLVWAS-GIDSDGSSTYYADSVKGRFTISRDNAKNAVFLQMNS 62

Query: 366 GDSRDTVG*YYV 401
             + DT   Y V
Sbjct: 63  LRAEDTAVYYCV 74


>AM079663-1|CAL03809.1|  102|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 102

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 198 TYNTSTYFLRQFEGVKWLPIDMDSVNSSTRFRDNSKTRFWLFPSSNPNAVLLRGRNGDSR 377
           TY  S       +G++W+ I      SST + D+ K RF +   ++ N + L+  +  + 
Sbjct: 34  TYGMSWVRQAPGKGLEWVSIISSGSGSSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAE 93

Query: 378 DT 383
           DT
Sbjct: 94  DT 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,748,383
Number of Sequences: 237096
Number of extensions: 1913948
Number of successful extensions: 7000
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7000
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)