Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6164
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    28   6.7  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    28   6.7  
AF016447-13|AAG24017.1|  334|Caenorhabditis elegans Serpentine r...    28   6.7  

>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 382 VSLLSPFLPRSSTAFGFDEGNSQNRVLELSRKRVEE 275
           + +  P +PR + +F  DEG      L+  +K+VEE
Sbjct: 33  IEVKQPAVPRPAMSFDADEGADSTFKLKKDKKKVEE 68


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 100 REKIQFRTSESEKIDGASREPFDR 29
           R+K Q  + +S+K+DG S+E  DR
Sbjct: 135 RQKKQLESKKSQKVDGKSKEERDR 158


>Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 382 VSLLSPFLPRSSTAFGFDEGNSQNRVLELSRKRVEE 275
           + +  P +PR + +F  DEG      L+  +K+VEE
Sbjct: 33  IEVKQPAVPRPAMSFDADEGADSTFKLKKDKKKVEE 68


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 100 REKIQFRTSESEKIDGASREPFDR 29
           R+K Q  + +S+K+DG S+E  DR
Sbjct: 135 RQKKQLESKKSQKVDGKSKEERDR 158


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 393 YYVSTEAHCAVK-PSVVFGLFGGNARRRDVV*FVLFCLFSGSFRFKYVITVVY*LVSIWD 569
           + +  E++ +V  PS++    GG+         +L C+F   FRF+ ++  +Y +    +
Sbjct: 65  FVIRVESNLSVSDPSILCTAGGGHQEES-----MLNCIFGVGFRFENIVKDLYLVAKNDE 119

Query: 570 SVQMWENE 593
            + +W NE
Sbjct: 120 EMTLWVNE 127


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 393 YYVSTEAHCAVK-PSVVFGLFGGNARRRDVV*FVLFCLFSGSFRFKYVITVVY*LVSIWD 569
           + +  E++ +V  PS++    GG+         +L C+F   FRF+ ++  +Y +    +
Sbjct: 65  FVIRVESNLSVSDPSILCTAGGGHQEES-----MLNCIFGVGFRFENIVKDLYLVAKNDE 119

Query: 570 SVQMWENE 593
            + +W NE
Sbjct: 120 EMTLWVNE 127


>AF016447-13|AAG24017.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein268 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 157 FHFKCEVYNYSVGLHTIPLLIFLDSSKVLSGYP 255
           FH  C V +Y + + T+P L+F     VL G+P
Sbjct: 49  FHVWCMVLDYGITVLTVPYLLF----PVLGGFP 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,514
Number of Sequences: 27780
Number of extensions: 290598
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)