Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6162
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 32 0.56
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 29 3.9
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 29 3.9
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643... 29 3.9
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007... 29 5.2
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 5.2
01_01_0092 + 722744-723459,723542-723711,723792-724885 29 5.2
05_05_0149 - 22733703-22736216 28 6.9
01_06_1747 + 39627938-39628441 28 6.9
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 28 9.1
06_03_0683 - 23490215-23490997 28 9.1
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 31.9 bits (69), Expect = 0.56
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +3
Query: 414 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEK 593
T S+ V+ AA + +G + VT+ +S+ VD+ V+P+ A + DE K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717
Query: 594 TTVETLDVSTTQEPKTSAPAV 656
LD T + T++ AV
Sbjct: 718 R--RKLDSCATMDMSTASRAV 736
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = -1
Query: 678 GFPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPS-CTERQSR 550
G VLQS+P + SS+P S K P F+ SS ++R S C ++ R
Sbjct: 255 GVVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 557 WRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTG 673
WR + +A D LG+ Y +E++S+S SDC +G
Sbjct: 2 WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESG 39
>01_01_0826 +
6431621-6431917,6432356-6432505,6432614-6432796,
6433305-6433385,6433548-6433586,6433646-6433849,
6433933-6434073,6434270-6434437,6434498-6434518
Length = 427
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 166 NWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRGE-NIFLDIRVSNSSMR 8
N S ME I L RAG VTVA ++ RR + N+ DI V ++ R
Sbjct: 257 NGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAAKR 310
>12_02_0719 +
22500217-22500395,22500506-22500551,22500671-22500745,
22500846-22500932,22501077-22501148,22501267-22501338,
22501448-22501519,22501644-22502510
Length = 489
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 489 TAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSAPA 653
T P+ + K + P+ ET +E T ETL V +E T++ A
Sbjct: 274 TTPMVQTEVKLEEETETTPVAETTEVKPAEETETSTVAETLQVKPAEETDTTSMA 328
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 167 HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 256
HVPM EP I S C V AD G KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366
>01_01_0092 + 722744-723459,723542-723711,723792-724885
Length = 659
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 144 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 260
+S + +F NL S PLW +P F D+G ++Y
Sbjct: 92 ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130
>05_05_0149 - 22733703-22736216
Length = 837
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 486 VTAPISENVDKTKNTERV--VPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSA 647
+ AP ENVDK++ T ++ P+ E + +E +++ VE S+ E K A
Sbjct: 553 MNAPAPENVDKSEETSKISTTPVTEDKEIAEIEEYMKQCQVEEQLASSISEEKFRA 608
>01_06_1747 + 39627938-39628441
Length = 167
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 627 QEPKTSAPAVVTAAPGTRGEERTDH-ALRTR*SDRKRQRDPT 749
+E + PA T+AP T G+E H L T R R+ DP+
Sbjct: 83 RETWSRRPATTTSAPATGGKEPPRHLVLSTARQCRDRKEDPS 124
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -1
Query: 678 GFPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPSCTERQSRQ*VQ 538
G VLQS+P + SS+P S K P F+ SS ++R S + ++ +Q
Sbjct: 240 GVVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRRRAKKKRTLQ 290
>06_03_0683 - 23490215-23490997
Length = 260
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = -3
Query: 151 METGCAITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNS 17
++TG ++L++ + +T K + + +R E I++D+R+ S
Sbjct: 76 IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYMDVRIDPS 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,256
Number of Sequences: 37544
Number of extensions: 305651
Number of successful extensions: 1084
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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