Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6161
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    33   0.13 
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           29   2.0  
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    28   2.7  
06_03_0416 + 20568087-20568702,20568767-20570313                       27   6.2  
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    27   6.2  
08_02_1461 - 27299891-27301870                                         27   8.2  
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332     27   8.2  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   GAFVLKRCTGVRIPQAGTNFSNEICTQQMFTIDFHGE 116
           G  ++ RCTGV I   G N   +I T      DFHGE
Sbjct: 153 GGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -2

Query: 302 SSKVSV*LQRLPHPSNRNALLLHGRNKQGGGTYPRGLTRGPTTSNYANYNFAG 144
           S ++ + LQ LP P   +    HG    GGG    G T+    S  ANY+F G
Sbjct: 388 SQELRLSLQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFGG 436


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 51  AGTNFSNEICTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTSCESARIGTTALLI 227
           +GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G      + R+      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 228 SAV 236
           +AV
Sbjct: 89  NAV 91


>06_03_0416 + 20568087-20568702,20568767-20570313
          Length = 720

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -3

Query: 304 QVLKSQYSYNGYPTLQTETHYCFTAEISRAVVPIRADSQEVLPPVITQIIILR 146
           Q   S +S + +  +Q  TH    ++  RA+V +      V   ++  +I+LR
Sbjct: 394 QSYSSNFSSSAFLKIQDSTHKSLLSKEKRAIVLVAGSLSFVTSVIVAVLIVLR 446


>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 248 RFGLKGGVAVVTILRL*NLYLKVGGASTL*MSMGSSNHLTSG 373
           + G+ G + V+   R   + L +GG     ++MG + HL +G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 266 HPSNRNALLLHGRNKQGGGTYPRGLTRGPTTS 171
           H ++    LL GR + GGG + RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
          Length = 190

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 265 WGSRCNYTETLELVSQGGWRVYVVDVYGLQ 354
           W     Y++T ELV + GW+ + VD  G+Q
Sbjct: 72  WSIGVAYSDTGELVLRSGWKEF-VDANGVQ 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,277,764
Number of Sequences: 37544
Number of extensions: 284363
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)