Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6159
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 36 0.030
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 32 0.48
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 3.4
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p... 28 7.8
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p... 28 7.8
Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 28 7.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 7.8
AF067609-11|AAC17532.2| 252|Caenorhabditis elegans Hypothetical... 28 7.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 7.8
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 613 PYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVPV 732
P + + +P P V +P V VP+P P + +PVPV
Sbjct: 2 PPPIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPV 41
Score = 34.7 bits (76), Expect = 0.068
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 613 PYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVPV 732
P + VP P V + +P + +P+P P + VPVPV
Sbjct: 6 PIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPV 45
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 634 VPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVPV 732
+P P + P V PVPQP V +P+P+
Sbjct: 1 MPPPIPIPIPAPVPVPAPVPQPVPVPMPMPMPM 33
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 583 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVPV 732
P + H KP+ + P P + K +P+ +P P P K P P+
Sbjct: 184 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPM 233
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 583 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVP 729
P+ + KP + +P P + K +P P P+P K +P+P
Sbjct: 194 PFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIP 242
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 580 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVP 729
+P + H KP+ + P P + K +P+ +P P+P P P
Sbjct: 217 MPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKPMPKPKP 266
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +1
Query: 580 VPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVP 729
+P+ + KP P P+ K +P P P+P K +P+P
Sbjct: 87 MPFPKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIP 136
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 583 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVP 723
P + H KP+ + P P + K +P+ + P+P K +P
Sbjct: 112 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMP 158
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 613 PYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTV 708
P V VP P V+ +P V VPVP P V
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPTPV 180
>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 637 PTPYTVEKKIPYEVKVPVPQPYTVEKKVPVPV 732
P P K+ +VK P P+P E+ PVPV
Sbjct: 758 PEPAKKTKRSLKKVKEPEPEPEEYEQPTPVPV 789
>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 637 PTPYTVEKKIPYEVKVPVPQPYTVEKKVPVPV 732
P P K+ +VK P P+P E+ PVPV
Sbjct: 756 PEPAKKTKRSLKKVKEPEPEPEEYEQPTPVPV 787
>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 637 PTPYTVEKKIPYEVKVPVPQPYTVEKKVPVPV 732
P P K+ +VK P P+P E+ PVPV
Sbjct: 758 PEPAKKTKRSLKKVKEPEPEPEEYEQPTPVPV 789
>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 637 PTPYTVEKKIPYEVKVPVPQPYTVEKKVPVPV 732
P P K+ +VK P P+P E+ PVPV
Sbjct: 756 PEPAKKTKRSLKKVKEPEPEPEEYEQPTPVPV 787
>Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical
protein F53B6.6 protein.
Length = 610
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 186 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 28
+++F ++SE+ S S VI + +L LF C+ FL+ + N H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 183 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 67
+ IAT ++S+I + ++ P+ +F C RC + G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -3
Query: 181 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWSP 8
S H Y + C CP + R+P C +P P P PP PC + + P
Sbjct: 12 SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP 66
>AF067609-11|AAC17532.2| 252|Caenorhabditis elegans Hypothetical
protein C23H5.1 protein.
Length = 252
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 687 GHFHFIRDFLLNGVGSGHFDFDFVR 613
GH ++ L G G+GH+ FDF+R
Sbjct: 32 GHILVGKEVLDVGCGNGHYSFDFLR 56
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 664 IPYEVKVPVPQPYTVEKKVPVP 729
+P VPVP P+T+ VP P
Sbjct: 1111 VPVAAPVPVPTPFTIPPPVPPP 1132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,846
Number of Sequences: 27780
Number of extensions: 278155
Number of successful extensions: 794
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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