Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6159
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 598 VHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVP 729
           VHV K   +  + PT    + + P +V + + +P       P P
Sbjct: 276 VHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFP 319


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 598 VHVDKPYEVKVKVPTPYTVEKKIPYEVKVPVPQPYTVEKKVPVP 729
           VHV K   +  + PT    + + P +V + + +P       P P
Sbjct: 276 VHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFP 319


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 377 KLLRW*RRCLFRIQSRNTSPIPSRRKYPMR 466
           K L W ++ +F  ++   +P+ S +KY +R
Sbjct: 80  KFLWWYKQGMFLSRNAIFTPLNSEQKYEVR 109


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 377 KLLRW*RRCLFRIQSRNTSPIPSRRKYPMR 466
           K L W ++ +F  ++   +P+ S +KY +R
Sbjct: 80  KFLWWYKQGMFLSRNAIFTPLNSEQKYEVR 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,085
Number of Sequences: 438
Number of extensions: 3985
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)