Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6157
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70308-10|CAA94345.2|  505|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF003143-4|AAO61427.1|  247|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF003143-3|AAL65781.1|  385|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z70308-10|CAA94345.2|  505|Caenorhabditis elegans Hypothetical
           protein F49E11.3 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 562 SFSYSCINIAIYLIHNDFIALRVDELTAHL 473
           ++S  C  I ++LIH+  + LRVD+ T  L
Sbjct: 401 TYSAICAFIILFLIHHSPVGLRVDKYTEEL 430


>Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical
           protein ZK792.7 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 354 NALLLYGRNRQGGGTYLCGLTRRPTTFNYANYNFADL 244
           NA+ + G N  GG + L   +RR   +NY   N +DL
Sbjct: 130 NAIYIAGDNDIGGESELISESRRNQFYNYFRNNVSDL 166


>AF003143-4|AAO61427.1|  247|Caenorhabditis elegans Hypothetical
           protein C53H9.2c protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 68  RTIHI-SNLCLALCPGASLSASGVGRAVIDLS 160
           +TIHI S LCL  CPG  + +   GR+ + L+
Sbjct: 168 QTIHIDSQLCLCDCPGLVMPSFSFGRSEMFLN 199


>AF003143-3|AAL65781.1|  385|Caenorhabditis elegans Hypothetical
           protein C53H9.2b protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 68  RTIHI-SNLCLALCPGASLSASGVGRAVIDLS 160
           +TIHI S LCL  CPG  + +   GR+ + L+
Sbjct: 168 QTIHIDSQLCLCDCPGLVMPSFSFGRSEMFLN 199


>AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical
           protein C53H9.2a protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 68  RTIHI-SNLCLALCPGASLSASGVGRAVIDLS 160
           +TIHI S LCL  CPG  + +   GR+ + L+
Sbjct: 337 QTIHIDSQLCLCDCPGLVMPSFSFGRSEMFLN 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,613,367
Number of Sequences: 27780
Number of extensions: 388270
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)