Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6156
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 31 0.18
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 30 0.41
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 29 0.55
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.55
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.3
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 2.2
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 2.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.9
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.9
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.9
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 5.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.1
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 26 5.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.1
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 6.7
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.7
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 6.7
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 6.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 6.7
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 26 6.7
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 8.9
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 8.9
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.9
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 8.9
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.1 bits (67), Expect = 0.18
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Frame = +3
Query: 117 SSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLEKFEVPDENEEIK 296
S+ +EL+D+ KD+ +A K EV+D+ VK E+++ KS+ E E E ++
Sbjct: 465 STYKELMDRVQN-KDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQEH---KKEVEALQ 520
Query: 297 RPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND--INTAEIALRQGFQEVSDGIG 470
LV+ E+E E + EK N+ I T L Q ++E + I
Sbjct: 521 LQLVNSSTELESVKSENEKLKNELVLEIEKRKKYETNEAKITTVATDLSQYYRESKEYIA 580
Query: 471 KWYA---RTEQINE 503
Y RTE+ N+
Sbjct: 581 SLYEKLDRTERNNK 594
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 29.9 bits (64), Expect = 0.41
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Frame = +3
Query: 108 DNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLEKFEVP---- 275
DN E +D +N +++ + +NK E ++ + EE K S+ E +
Sbjct: 78 DNSKKESTNLDDSNMLEEPKHHDNSNK-ESTNLDDLNMSEEPKHHDSSNKESTNLDNSNM 136
Query: 276 DENEEIK-------RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 425
DE+E K +P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 137 DESENQKNFKIEEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 29.5 bits (63), Expect = 0.55
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 3/224 (1%)
Frame = +3
Query: 48 RAASIPDKVPEAE--DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI 221
++ SIP ++ E D P+N NL S + D K I+NS+ A ++V+D +
Sbjct: 6 QSESIPHEILPKEPFDLPMN---NLKSSPKNKDSE---KRINNSI-AESEQVVDSALS-- 56
Query: 222 VEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHH-EDAEKIVSS 398
+ + D+ ++P +N EI + P T H K+ +
Sbjct: 57 --NPETNANEDIIAPQLPSQNSEI------IEKNSPVNKLNSSTSLTTHQLASLPKLEVT 108
Query: 399 VKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHF 578
++++ AE + +E + + TE + + A + N + Q N T +
Sbjct: 109 DHDNVSEAETVVLNEDEEKETSLVGSVSVTEDLGDSSAIGRTILVNNSVEPQMEN-TANI 167
Query: 579 IKPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 710
TI +PS++E+ ++ + +ETN NS L + SE
Sbjct: 168 -----TIVSPSLKESDFESEEKATNDNNGLIETNHNSKLEESSE 206
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.55
Identities = 48/235 (20%), Positives = 103/235 (43%), Gaps = 11/235 (4%)
Frame = +3
Query: 39 LAARAASIPDKVPEAED--KPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPV 212
+A+ I K E +D L+VV + E L+ + T K +++ + N+ + I+ V
Sbjct: 1027 IASLQTEIEKKRAENDDLQSKLSVVSS-EYENLLLISSQTNKSLED--KTNQLKYIEKNV 1083
Query: 213 KVIVEEIKPSLKSDLEKF-----EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHED 377
+ +++E K +LE+ ++ +EN +IK L+ LR QH + E
Sbjct: 1084 QKLLDE-KDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKEK 1142
Query: 378 AEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFG---AQ 548
++ + + N+ N ++L Q + + ++++++ SL +
Sbjct: 1143 SDAL-EQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMKKSLSDSDNVISVIRSD 1201
Query: 549 IQKLNETLHFI-KPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 710
+ ++N+ L + K D+++ E Q++ + + LK E +FN L E
Sbjct: 1202 LVRVNDELDTLKKDKDSLSTQYSEVCQDR---DDLLDSLKGCEESFNKYAVSLRE 1253
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Frame = +3
Query: 51 AASIPDKVPE--AEDKPL--NVVDNLSSEQELIDQANTIKDI-DNSLRANKKEVIDIPVK 215
A ++ VPE AED + + V SE + +++ ++D +NS+ +KK +P
Sbjct: 502 AIALQSSVPENKAEDSVVLKSSVPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSN 561
Query: 216 VIVEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPG 326
E PS+ + + + P+ + + P V PG
Sbjct: 562 NKTEGYTPSVVREEKNYSEPNASPSVIPPRVPTPVPG 598
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 2.2
Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 5/156 (3%)
Frame = +3
Query: 207 PVKVIVEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEH-----H 371
P ++ +PS+++ +EK N + V Q Q ET P
Sbjct: 237 PTNGVIPGAQPSIEASIEKESTSIRNSTVTNDRVVNTTVDVSQSQTVETSGPSKEVPTTQ 296
Query: 372 EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQI 551
DA + D TA Q FQ + D + K E+ E Q F +N +
Sbjct: 297 PDASAAKPRTEFDFQTA----NQKFQSMKDDLLKG-KNDEEAEEFYKPKQSFFDNISCES 351
Query: 552 QKLNETLHFIKPADTIAAPSVEETQNKASFETIESG 659
++ ++ AD A E + N +F SG
Sbjct: 352 KEKG-----MEAADRRALRDRERSLNMETFGVAGSG 382
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 27.1 bits (57), Expect = 2.9
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDI--DN-------SLRANKKEVIDI--PVK 215
++ E D+ L+ +D +++Q D N +KD+ DN S ++ E +++ P+K
Sbjct: 604 RISELNDRELDEIDWQAADQ---DVENALKDLSDDNDFDTGSISASQSQPEALEVNTPIK 660
Query: 216 VIVEEIKPSLKSDLEKFEVPDENEE 290
+ I+PS D EK ++N E
Sbjct: 661 RKADLIQPSYNYDGEKRRKENDNHE 685
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 2.9
Identities = 41/220 (18%), Positives = 91/220 (41%), Gaps = 7/220 (3%)
Frame = +3
Query: 48 RAASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVE 227
R ++ K+ A DN+ E I+ T LR + E +I K +
Sbjct: 921 RQENLQSKLIAANKDTTQNPDNVEVEAISIELERT----KEKLRMAELEKSNIQQKYLAS 976
Query: 228 EIKPSLKSDL-EKFE--VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSS 398
E + ++ E+F+ V E + + LR+ ++ E E ++++
Sbjct: 977 EKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQ 1036
Query: 399 VKNDINTAEIAL--RQGFQEV-SDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNET 569
+++ + + AL ++ ++++ SD + E I + ++ ++ N+ ++I T
Sbjct: 1037 LEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKERSLMKECHSNYESEIVSHGRT 1096
Query: 570 LHFIKPADT-IAAPSVEETQNKASFETIESGLKSLETNFN 686
++ T + + + KA+FE SGL E ++N
Sbjct: 1097 TQKLRDLRTEFDEVNTKYLKLKANFEQQHSGLSGAEKDWN 1136
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 330 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 416
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 319 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 426
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +3
Query: 171 SLRANKKEVIDIPVKVIVEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHE 350
SL N +++ ++ E I+ S + E+ ENE + +DLR ++ E
Sbjct: 5 SLSPNVEDLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENIDLRTTAINLEEQLE 64
Query: 351 TQNPEHHEDAEKIVS 395
T E+ E+ K+ +
Sbjct: 65 TVQNENEENKTKLAA 79
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 252 DLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSS 398
D E + P + E K P + GP + H+ +H+E E+ + S
Sbjct: 388 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQS 436
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 222 VEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIV--S 395
+ +IKP S+ ++F+ ++ + PL+D+ +P H+ N +KI +
Sbjct: 184 MNKIKPKNDSESDRFKRNSQSLSQQSPLLDVHSPDNSNHRTMLNINNSSPIKPKKIFKPN 243
Query: 396 SVKNDIN 416
VKN I+
Sbjct: 244 EVKNRIS 250
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 237 PSLKSDLEKFEVPDENEEIKRPLVDLRNPGPPQHQEHETQN 359
PS K E ++ E I + VD+ NPG + ET N
Sbjct: 40 PSSKFQNEPLQLNSEESSIMQRYVDMLNPGATFVNDSETFN 80
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.7
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +3
Query: 99 NVVDNLSSEQE--------LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEI 233
NVVD+LS EQE L DQ N + NSLR+ +P + V++I
Sbjct: 137 NVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSG-----SVPFTITVDDI 184
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 327 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 494
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 6.7
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +3
Query: 387 IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 563
++SS N + + A G +++ D + EQ+ L + E FG ++Q++
Sbjct: 1 MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58
Query: 564 ETLHFIKPADTIAAPSVEETQNKASFETIES 656
E L KP +T T NKA FE + S
Sbjct: 59 ECLKGKKPENT----EDGATSNKA-FEGLRS 84
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 582 KPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVATFKADGE 749
KP + + PS+ + K T+ + K + T S N I++TF + E
Sbjct: 398 KPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYE 453
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 486 TEQINELQASLQHFQENFGAQIQKLNETL 572
+ ++N+LQ ++ + F QI+KLN +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 455 VRRYWKMVRSYRAN*RAPGQLA--TFPRKFRRS-DTKVE*N 568
+R+ W VR +R+N R QL TFP+ + DT+ E N
Sbjct: 582 LRKVWDSVREWRSNLRGVLQLVYETFPKFITNAVDTRQELN 622
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 432 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 584
+ Q E+ D + K ++IN + + + F+E + KLN+ L +I+
Sbjct: 9 MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/89 (22%), Positives = 35/89 (39%)
Frame = +3
Query: 96 LNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLEKFEVP 275
L N ++Q + NT + + +E P E KP+ E +
Sbjct: 65 LTAAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSLSASHE-KPARPQTGEGSDNE 123
Query: 276 DENEEIKRPLVDLRNPGPPQHQEHETQNP 362
DE+E+I + DL + + Q E ++P
Sbjct: 124 DEDEDIDALIEDLYSQDQEEEQVEEEESP 152
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +3
Query: 54 ASIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD----IDN----SLRANKKEVIDIP 209
A PD A + L++ DN+SS NTI + ID+ +L N +++ +
Sbjct: 431 ADTPDSYLAAPKERLSISDNMSSSSSQTATVNTISNYLNVIDSVREIALTVNDEKIYGLA 490
Query: 210 VKVIVEEIKPSLKS 251
+ +++++ S
Sbjct: 491 ISLLIQKFSRKFDS 504
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 322 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 465
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,439
Number of Sequences: 5004
Number of extensions: 53600
Number of successful extensions: 250
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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