Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6154
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    33   0.033
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    27   2.2  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    27   2.9  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   3.8  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   5.1  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   5.1  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   5.1  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   5.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.7  
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    25   8.9  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    25   8.9  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   8.9  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    25   8.9  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   8.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   8.9  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +1

Query: 310 KFSLSILSWT*IRVVFVTSHPSAPNTPMSSSWSRLAV---GLKAAPSTHTWWPR--RALG 474
           KF +S++S+   R   + S+P   NTP++       V   G     S H +WP+   +LG
Sbjct: 193 KFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASLG 252

Query: 475 CPSSEALS 498
            PS +A+S
Sbjct: 253 FPSPDAIS 260


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
 Frame = -1

Query: 273 SSGYTNPRGCLRCH-NVRRRVGTPPNY*SNKRCALCCPHTELMRRNS---PGQPTSQISL 106
           SS    PR    C  NV+     PP Y ++       P   L R      P  PT  + +
Sbjct: 485 SSNSRLPRVRSACTLNVQELSKIPPYYEAHSAFTNVLPLDGLPRYEEATRPSSPTESVEI 544

Query: 105 AFSTVTVRPCPRAEFLQPGGP 43
             +T T+ P P    + P  P
Sbjct: 545 PSNTTTIAPSPVPTIIAPALP 565


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 73  RARTNRNC*KCERYLRRWLSWRVAP 147
           R  T  +C +CERY++   +W +AP
Sbjct: 55  RESTVNHCRECERYMQPPNNWMIAP 79


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
 Frame = +3

Query: 231 YGIEDIPVDLCT--HLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFTSLRSKHP----- 389
           +G ED  V L T  H    ++ +    + + +  P  D D S    F      HP     
Sbjct: 116 FGTEDDLVSLITAAHKAGIWVMLDSIVNSMALAPPLADADYSSLNPFNKESYFHPYCLID 175

Query: 390 -DV--KFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 539
            D+       +  W + G   + +  + S   S++       + KYDFDGL +D
Sbjct: 176 WDITDNETNVMDCWQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 149 CGATRQDSQRRKYRSHFQQLRFVRALVP 66
           CG TR   Q++  R  F+QLR ++   P
Sbjct: 422 CGKTRSPHQKKPLRVEFRQLRPMQQFSP 449


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 381 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 479
           +HP  KF+V VGG+     ++ H    K T  S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 148 AAQLARTANVANIARIFNSYGSSVPSCRIPAA 53
           A   A+      I R F  YG+ VP C + AA
Sbjct: 220 AVATAQDIQTIMICRFFGGYGACVPLCVVAAA 251


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 459 QKSTRMSFIRSVVDFLKKYDFDGLDLD 539
           +   R  F   V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = +1

Query: 358 VTSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTSTVWIS 537
           V S  S+P++  SS+ +  ++   + PST +     +    SS + ST+  + +S+  IS
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIIS 274

Query: 538 TGS 546
           + S
Sbjct: 275 SSS 277


>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 111 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 281
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 282 FIGVTEKSSEVLI 320
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 111 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 281
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 282 FIGVTEKSSEVLI 320
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 695 LHQPE-ISKRYGSSQLPSSIGSDERPL*LLDEIQEL 591
           L  PE I +     QLPS++  DE+ L L DEI  L
Sbjct: 13  LFSPESIEQSLKRCQLPSTLLYDEKGLRLFDEITNL 48


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 111 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 281
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 282 FIGVTEKSSEVLI 320
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 177 RIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLI-YSFIGVTEKSSEVLIIDPELDVDKSG 353
           R +  F NW + RP    Y I +    L  +L     + + EK    ++++  +  D+  
Sbjct: 28  RYIVPFKNWVIGRPDRKEYAIRNGAPKLLLNLFSLENLSMNEKYQVFVVLNSLMSEDQDP 87

Query: 354 FRNF 365
           F  F
Sbjct: 88  FVQF 91


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 533 IQTVEVIFLQEVDNASD 483
           + TVE+  LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,665
Number of Sequences: 5004
Number of extensions: 64984
Number of successful extensions: 199
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)