Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6152
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    84   2e-17
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    31   0.12 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   4.4  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   5.8  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.7  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
 Frame = +1

Query: 46  VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 222
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N 
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 223 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRR 396
            R    +     K  +KPAK L R+   A A  R  YK +   +    YR DL K ++ R
Sbjct: 61  PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVAR 119

Query: 397 ASAILRSQRP 426
           ASAIL SQRP
Sbjct: 120 ASAILSSQRP 129


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 249 VHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 103
           +HYC S  +  LHDT   LV       G + S +++     + D  L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 85  NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRKGFTVVYKKAK 261
           NN ++L+KK+   K     P+ V     +  NG+  K  A   V  P RK     +   +
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGR 243

Query: 262 ATRKPAKNL 288
             +    NL
Sbjct: 244 CNKAEDCNL 252


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 58  SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 165
           S ++ + + NNN ++V + +I+ P+S    +   LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 189 SQESCWCRGEP*QEGIHSSVQESKGY 266
           S +S W   +P  + IHSSVQE++G+
Sbjct: 2   SNKSAW---QPQFDEIHSSVQEAEGF 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,996
Number of Sequences: 5004
Number of extensions: 40842
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)