Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6152
(564 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 25 0.70
M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 22 3.7
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 22 4.9
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 21 6.5
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 21 6.5
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 21 6.5
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 21 6.5
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 21 6.5
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 21 6.5
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 21 8.6
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 8.6
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 21 8.6
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 21 8.6
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 24.6 bits (51), Expect = 0.70
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 82 RNNNAFLVKKRNIKKPFSKEP 144
R N+ L+KKRN PF K P
Sbjct: 8 RINSCDLLKKRNENDPFLKRP 28
>M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E30. ).
Length = 109
Score = 22.2 bits (45), Expect = 3.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 292 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 420
+RP A + L ++KR N Y T+ + L R + +Q
Sbjct: 21 KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 21.8 bits (44), Expect = 4.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 82 RNNNAFLVKKRNIKKPFSK 138
R N+ L+KKRN PF K
Sbjct: 129 RINSCDLLKKRNENDPFLK 147
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 6.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 261 LCFLVHYCESLPVRV 217
LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 6.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 261 LCFLVHYCESLPVRV 217
LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 6.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 261 LCFLVHYCESLPVRV 217
LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 6.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 261 LCFLVHYCESLPVRV 217
LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 6.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 261 LCFLVHYCESLPVRV 217
LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 21.4 bits (43), Expect = 6.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 195 LVNQAVVPEGVEVSHIVRLLAERLFDIALLHKECIV 88
L+N A + V + + L +++FDI LL C++
Sbjct: 88 LINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMI 123
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 21.0 bits (42), Expect = 8.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 292 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 420
+RP A + L ++KR N Y T+ + L R + +Q
Sbjct: 21 KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQ 63
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.0 bits (42), Expect = 8.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 49 KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 210
K+ SSL+ I NNN + N + NN N Y +I+ + + V
Sbjct: 313 KIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPV 366
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 21.0 bits (42), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 9 EHVVFGVEIGLNRKNVVVTEL 71
+ V G +G N KNV V EL
Sbjct: 243 QEAVPGDNVGFNVKNVSVKEL 263
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 9 EHVVFGVEIGLNRKNVVVTEL 71
+ V G +G N KNV V EL
Sbjct: 300 QEAVPGDNVGFNVKNVSVKEL 320
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,307
Number of Sequences: 438
Number of extensions: 2713
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -