Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6150
(539 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL138972-1|CAB72284.1| 1035|Drosophila melanogaster EG:BACR25B3.... 30 2.3
AJ487018-1|CAD31650.1| 4223|Drosophila melanogaster perlecan pro... 30 2.3
AJ271462-1|CAB70094.1| 708|Drosophila melanogaster perlecan dom... 30 2.3
AE014298-408|AAN09079.1| 4223|Drosophila melanogaster CG33950-PD... 30 2.3
AE014298-407|AAF45786.3| 4179|Drosophila melanogaster CG33950-PA... 30 2.3
AE014298-406|AAN09078.1| 4228|Drosophila melanogaster CG33950-PE... 30 2.3
AE014298-405|AAN09077.1| 4117|Drosophila melanogaster CG33950-PC... 30 2.3
AE014298-404|AAF45787.2| 4629|Drosophila melanogaster CG33950-PF... 30 2.3
AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p pro... 29 5.4
AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein... 29 5.4
AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subu... 29 5.4
AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA... 29 5.4
>AL138972-1|CAB72284.1| 1035|Drosophila melanogaster EG:BACR25B3.11
protein.
Length = 1035
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 IVSIKATLYIVGEHSWSLRVNRDVTTMSGTSSC 504
I+S+K LY+ G +++VNRDV G C
Sbjct: 717 ILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGC 749
>AJ487018-1|CAD31650.1| 4223|Drosophila melanogaster perlecan protein.
Length = 4223
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 IVSIKATLYIVGEHSWSLRVNRDVTTMSGTSSC 504
I+S+K LY+ G +++VNRDV G C
Sbjct: 3892 ILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGC 3924
>AJ271462-1|CAB70094.1| 708|Drosophila melanogaster perlecan domain
V protein.
Length = 708
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 IVSIKATLYIVGEHSWSLRVNRDVTTMSGTSSC 504
I+S+K LY+ G +++VNRDV G C
Sbjct: 377 ILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGC 409
>AE014298-408|AAN09079.1| 4223|Drosophila melanogaster CG33950-PD,
isoform D protein.
Length = 4223
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 IVSIKATLYIVGEHSWSLRVNRDVTTMSGTSSC 504
I+S+K LY+ G +++VNRDV G C
Sbjct: 3892 ILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGC 3924
>AE014298-407|AAF45786.3| 4179|Drosophila melanogaster CG33950-PA,
isoform A protein.
Length = 4179
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 IVSIKATLYIVGEHSWSLRVNRDVTTMSGTSSC 504
I+S+K LY+ G +++VNRDV G C
Sbjct: 3848 ILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGC 3880
>AE014298-406|AAN09078.1| 4228|Drosophila melanogaster CG33950-PE,
isoform E protein.
Length = 4228
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 IVSIKATLYIVGEHSWSLRVNRDVTTMSGTSSC 504
I+S+K LY+ G +++VNRDV G C
Sbjct: 3897 ILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGC 3929
>AE014298-405|AAN09077.1| 4117|Drosophila melanogaster CG33950-PC,
isoform C protein.
Length = 4117
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 IVSIKATLYIVGEHSWSLRVNRDVTTMSGTSSC 504
I+S+K LY+ G +++VNRDV G C
Sbjct: 3786 ILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGC 3818
>AE014298-404|AAF45787.2| 4629|Drosophila melanogaster CG33950-PF,
isoform F protein.
Length = 4629
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 IVSIKATLYIVGEHSWSLRVNRDVTTMSGTSSC 504
I+S+K LY+ G +++VNRDV G C
Sbjct: 4298 ILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGC 4330
>AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p protein.
Length = 1238
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 367 PSIKYITSLSYHCTAEGARGDPTNLCRSDLVVQDKTIIHLGFLF 236
P Y+ ++Y+C A G R P N +L +KTI L LF
Sbjct: 1116 PEEPYLDGINYNCVAPGKRFQPMN----NLSGGEKTIAALALLF 1155
>AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein
protein.
Length = 1238
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 367 PSIKYITSLSYHCTAEGARGDPTNLCRSDLVVQDKTIIHLGFLF 236
P Y+ ++Y+C A G R P N +L +KTI L LF
Sbjct: 1116 PEEPYLDGINYNCVAPGKRFQPMN----NLSGGEKTIAALALLF 1155
>AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subunit
protein.
Length = 1238
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 367 PSIKYITSLSYHCTAEGARGDPTNLCRSDLVVQDKTIIHLGFLF 236
P Y+ ++Y+C A G R P N +L +KTI L LF
Sbjct: 1116 PEEPYLDGINYNCVAPGKRFQPMN----NLSGGEKTIAALALLF 1155
>AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA
protein.
Length = 1238
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 367 PSIKYITSLSYHCTAEGARGDPTNLCRSDLVVQDKTIIHLGFLF 236
P Y+ ++Y+C A G R P N +L +KTI L LF
Sbjct: 1116 PEEPYLDGINYNCVAPGKRFQPMN----NLSGGEKTIAALALLF 1155
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,600,278
Number of Sequences: 53049
Number of extensions: 513072
Number of successful extensions: 936
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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