Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6148
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    30   0.42 
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.1  

>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 643 SMTPTVRPPEAASKEPKAIREKSSAKIAAVQLKLSIIPK 527
           S TPT R PE  S+E  ++  ++SA +A  Q K    PK
Sbjct: 23  SKTPTERRPEGISRELYSLLGENSAPLAIYQKKFKEKPK 61


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -2

Query: 453 ESLSQSKIYQKFQITQLLKFSEYHT*YKLNLQNVEFTNALVFFSTYGVNKIYTRNV 286
           ES     +  +   T   KF EY + +   L+  E    ++ F+ YG+  ++T N+
Sbjct: 60  ESFHLPSLDPRASTTTSQKFQEYRSDFLEKLETAEPPEDVIMFTAYGLG-VHTHNL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,822
Number of Sequences: 5004
Number of extensions: 62887
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)