Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6148
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 199 ITLELCGLILTHKLD 155
           IT+ELCG  L ++LD
Sbjct: 134 ITMELCGTTLQNRLD 148


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 468 YIQN*ESLSQSKIYQKFQITQLLKFSEY 385
           Y +N + + + KI++  +I QL + SE+
Sbjct: 259 YRRNFKKMQEEKIFEPHRIPQLQEVSEF 286


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 636 HQQYGLLRLHPKNQK-QYEKKAQQRSLQSS*N*VLYQ 529
           H Q      H + Q+ Q++ +AQQ+ LQ+    ++YQ
Sbjct: 169 HHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQ 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,569
Number of Sequences: 438
Number of extensions: 4233
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)