Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6147
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...   284   8e-78
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    52   9e-08
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    31   0.13 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.9  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   5.0  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   5.0  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   5.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   6.6  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   8.7  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  284 bits (697), Expect = 8e-78
 Identities = 132/249 (53%), Positives = 184/249 (73%)
 Frame = +3

Query: 3   SKSGKGSSKEQTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALD 182
           S   K + +EQT PPT+ ++++F +  +P G++ D+  AE    RT     T EEKRALD
Sbjct: 55  SSKKKKTPQEQTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALD 107

Query: 183 RLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAF 362
           R + D Y ++R AAE HRQ R++ ++ IKPGM+M+D+   +E T R L+ EDGLK+G+ F
Sbjct: 108 RQNFDQYNDLRRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGF 167

Query: 363 PTGCSRNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPLVKG 542
           PTG S NHCAAHYTPN GDTT+L+  DV+K+D G H+NGRI+D AFT+ F+P+YD L+  
Sbjct: 168 PTGVSLNHCAAHYTPNAGDTTILKEKDVMKVDIGVHVNGRIVDSAFTMSFDPQYDNLLAA 227

Query: 543 VQEATEAGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNLNGHSIEPYKIH 722
           V+ AT  GI+ +G+D RL ++G A+QEVMES+EVE++G+ +QVK IRNL GH+++PY IH
Sbjct: 228 VKAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEINGKTHQVKSIRNLCGHNLDPYIIH 287

Query: 723 AGKTVPIVK 749
            GK+VPIVK
Sbjct: 288 GGKSVPIVK 296


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 9/203 (4%)
 Frame = +3

Query: 156 TSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC----EELEKTARR 323
           TSE        + +   + + A E  +   K +    +PG  + DIC    E L +  ++
Sbjct: 7   TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66

Query: 324 LIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGD---TTVLEYDDVVKIDFGTHING--RII 488
           +        G+AFPT  S N  AAH +P   D      L+  DVVKI  G HI+G   ++
Sbjct: 67  VYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLV 126

Query: 489 DCAFTLHFNPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQ 668
                +   P   P    V  A  A +KA+   ++  +    V ++     V+     Y 
Sbjct: 127 ATTTVVSEEPVTGP-AADVIAAASAALKAAQRTIKPGNTNWQVTDI-----VDKIATSYG 180

Query: 669 VKPIRNLNGHSIEPYKIHAGKTV 737
            KP+  +  H  E   I   K V
Sbjct: 181 CKPVAGMLSHQQEREVIDGKKQV 203


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = +3

Query: 351 GLAFPTGCSRNHCAAHYTP-------NTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLH 509
           G+A PT    N+CA +Y P          ++  L+  DV KI  G H +G     + T+ 
Sbjct: 72  GIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALISHTIV 131

Query: 510 FNPRYDP 530
             P   P
Sbjct: 132 VTPPPQP 138


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 278 HARLDPIADVFSCLPVGFSSMS 213
           H  LD I DVFSC PV   + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 189 HKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC 296
           + D+  E+ +  E+H +T +H +  + P   +ID+C
Sbjct: 386 YSDLRFELLYT-ESHSRTLRHEKRHVSPKSPLIDVC 420


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 40  SHLLYQ*RNYFLMETFLRVKLWTMVLL--RVLMRELQKIVLQVRRKELLIDYIKIFIRKS 213
           SHL     +YFL++ F+RV     ++L  +   ++    VL    K L + Y++   +  
Sbjct: 286 SHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSE 345

Query: 214 DMLLKPTGRQENTSAIGSSL 273
             +   TG   +   IG+ L
Sbjct: 346 KGIRAATGSNHSPGNIGTEL 365


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 288 DICEELEKTARRLIGEDGLKAGLAFPTGCSR--NHCAAHYTPNTGDTTVLEYDDVVKIDF 461
           D   +LE+  R+    + L  GL+F T  S   N    HY+P    + +++   +   D 
Sbjct: 343 DAATKLEQFRRK----NNLFMGLSFETISSTGPNGAVIHYSPPATGSAIIDPTKIYLCDS 398

Query: 462 GTHINGRIIDCAFTLHF 512
           G        D   T HF
Sbjct: 399 GAQYKDGTTDVTRTWHF 415


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 331  VKMGSKQVWLSPQDAAATTVQRII 402
            V  G   + L PQD A TT++RI+
Sbjct: 1241 VHSGDATLVLPPQDLAPTTIERIV 1264


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 258 CGCVFLSACGLQQHV*FPDKYLYVIYQELFSPHL*NDFLQFSHQYPQ 118
           C CV + +   QQ +  P  ++Y +     +  +  +FL F H YPQ
Sbjct: 351 CYCVEVHS---QQTILVPSGWIYAVVTPCDTISIAGNFLTFLHIYPQ 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,388
Number of Sequences: 5004
Number of extensions: 65889
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)