Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6147
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical ... 345 3e-95
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 67 1e-11
Z68134-2|CAA92223.1| 182|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z81086-5|CAB03119.2| 182|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical pr... 30 1.5
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 29 2.7
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 29 2.7
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 29 2.7
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 29 2.7
AF043701-7|AAK18972.1| 498|Caenorhabditis elegans Hypothetical ... 29 2.7
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 3.5
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 3.5
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 28 8.1
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 8.1
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 8.1
AF318614-1|AAK01102.1| 433|Caenorhabditis elegans ionotropic gl... 28 8.1
>AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical
protein Y116A8A.9 protein.
Length = 444
Score = 345 bits (847), Expect = 3e-95
Identities = 157/234 (67%), Positives = 192/234 (82%), Gaps = 2/234 (0%)
Frame = +3
Query: 54 PVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAE 227
P+ E FPDG FP G +D P +G D R A +R ++EEK+ALD +++++Q+ R +AE
Sbjct: 81 PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138
Query: 228 AHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTP 407
AHRQ RK++++WIKPGMTMI+ICE LE T+RRLI E GL+AGLAFPTGCS NHCAAHYTP
Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHYTP 198
Query: 408 NTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPLVKGVQEATEAGIKASGVD 587
N GDTTVL+Y DV KID+G H+ GR+ID AFT+HF+P++DPLV+ V+EAT AGIK SG+D
Sbjct: 199 NAGDTTVLQYGDVCKIDYGIHVRGRLIDSAFTVHFDPKFDPLVEAVREATNAGIKESGID 258
Query: 588 VRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNLNGHSIEPYKIHAGKTVPIVK 749
VRLCDVG V+EVM SHEVELDG+ Y VKPIRNLNGHSI Y+IHAGKTVPIVK
Sbjct: 259 VRLCDVGEIVEEVMTSHEVELDGKSYVVKPIRNLNGHSIAQYRIHAGKTVPIVK 312
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 66.9 bits (156), Expect = 1e-11
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 6/179 (3%)
Frame = +3
Query: 219 AAEAHRQTRKHIRNWIKPGMTMIDICEE-----LEKTARRLIGEDGLKAGLAFPTGCSRN 383
AAE K + IK G D+C+ LEKT + E G+A PT S +
Sbjct: 35 AAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNFTKGIAMPTCISID 94
Query: 384 HCAAHYTPNTGDT-TVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPLVKGVQEATE 560
+C HYTP + VL+ VVK+D GTHI+G I A T+ D V G
Sbjct: 95 NCICHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGASKDNKVTGKLADLL 154
Query: 561 AGIKASGVDVRLCDVGAAVQEVMESHEVELDGQMYQVKPIRNLNGHSIEPYKIHAGKTV 737
G +++ + + + + ++ + + PI N+ H +E +I K +
Sbjct: 155 RGTH-DALEIAIRSLRPDTENTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKI 212
>Z68134-2|CAA92223.1| 182|Caenorhabditis elegans Hypothetical
protein T27A8.3 protein.
Length = 182
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/35 (60%), Positives = 24/35 (68%)
Frame = +3
Query: 645 ELDGQMYQVKPIRNLNGHSIEPYKIHAGKTVPIVK 749
E G +VKPI +LNG SI +IH GKTVPIVK
Sbjct: 29 EFHGNSNEVKPIGSLNGQSIAQCRIHTGKTVPIVK 63
>Z81086-5|CAB03119.2| 182|Caenorhabditis elegans Hypothetical
protein F53B6.5 protein.
Length = 182
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +3
Query: 645 ELDGQMYQVKPIRNLNGHSIEPYKIHAGKTVPIVK 749
E G +VKPI +LNG SI +IH KTVPIVK
Sbjct: 29 EFHGNSNEVKPIGSLNGQSIAQCRIHTEKTVPIVK 63
>Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical
protein ZK1128.5 protein.
Length = 446
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 9 SGKGSSKEQTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDR 185
+GK KE ++P+ EL +G + M H P G + R A K +F+S K +
Sbjct: 118 AGKEPEKEGD-DASVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIE 173
Query: 186 LHKDIYQEIRHAAEAHR 236
L KDIY H E HR
Sbjct: 174 LDKDIYGPDNHLVEWHR 190
>Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical
protein C01A2.4 protein.
Length = 207
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 147 NRFTSEEKRALDRLHKDIYQEIRH-AAEAHRQTRKHI 254
NR ++R +DR K++ QEI+ AA+ H +H+
Sbjct: 24 NRDLESDRRQMDRREKELEQEIKKLAAKGHNDAARHL 60
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 207 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 67
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 16 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 207 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 67
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 13 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 207 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 67
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 22 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 207 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 67
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 15 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61
>AF043701-7|AAK18972.1| 498|Caenorhabditis elegans Hypothetical
protein K12C11.1 protein.
Length = 498
Score = 29.5 bits (63), Expect = 2.7
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 5/145 (3%)
Frame = +3
Query: 219 AAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAH 398
A+EAHR KH+R PG+ + T+ G L TGC N H
Sbjct: 199 ASEAHRAAMKHMR----PGLYEYQLESLFRHTSYYHGGCRHLAYTCIAATGC--NGSVLH 252
Query: 399 Y-TPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPLVKGVQEATEAG--- 566
Y N + ++ D+ D G N D + N ++ K V A A
Sbjct: 253 YGHANAPNDKFIKDGDMCLFDMGPEYNCYASDITTSFPSNGKFTEKQKIVYNAVLAANLA 312
Query: 567 -IKASGVDVRLCDVGAAVQEVMESH 638
+KA+ VR D+ ++V+ H
Sbjct: 313 VLKAAKPGVRWTDMHILSEKVILEH 337
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 312 TARRLIGEDGLKAGLAFPTGCSRNHCAAH 398
TAR+L E GLK GLAF G SRN H
Sbjct: 833 TARQLTYETGLKCGLAF-GGYSRNANVQH 860
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 312 TARRLIGEDGLKAGLAFPTGCSRNHCAAH 398
TAR+L E GLK GLAF G SRN H
Sbjct: 833 TARQLTYETGLKCGLAF-GGYSRNANVQH 860
>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
protein H05G16.1 protein.
Length = 1111
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 150 RFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIK 269
+ + + K+ L +LH D YQ ++ E +TR +N+ K
Sbjct: 277 KLSFKRKKLLVKLHPDSYQYLKETVEFSFETRDECKNFWK 316
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 179 KSSFLLTCKTIFCSSLINTLSRTMVHNLTLRKVSIRK*FRYWYSRWDGLL 30
K+ LL C + +C L+N L+ + TL KV K + W+GL+
Sbjct: 338 KNRTLLKCCSGYCVDLLNKLANDIGFTYTLYKVRDEKWGLKTENGWNGLI 387
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 179 KSSFLLTCKTIFCSSLINTLSRTMVHNLTLRKVSIRK*FRYWYSRWDGLL 30
K+ LL C + +C L+N L+ + TL KV K + W+GL+
Sbjct: 338 KNRTLLKCCSGYCVDLLNKLANDIGFTYTLYKVRDEKWGLKTENGWNGLI 387
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -2
Query: 497 GAVNNATIYVSTKVDLHYIIIFENCCITCVRSIMRCTVVAAASCGESQTCFEP 339
GA+ NATIY V Y + N C T + C C + C +P
Sbjct: 1627 GALTNATIYTCDPVSTCYQLGMNNNCTTIENGLSGC-------CCSTDACLDP 1672
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -2
Query: 497 GAVNNATIYVSTKVDLHYIIIFENCCITCVRSIMRCTVVAAASCGESQTCFEP 339
GA+ NATIY V Y + N C T + C C + C +P
Sbjct: 1627 GALTNATIYTCDPVSTCYQLGMNNNCTTIENGLSGC-------CCSTDACLDP 1672
>AF318614-1|AAK01102.1| 433|Caenorhabditis elegans ionotropic
glutamate receptor NMR-2 protein.
Length = 433
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 179 KSSFLLTCKTIFCSSLINTLSRTMVHNLTLRKVSIRK*FRYWYSRWDGLL 30
K+ LL C + +C L+N L+ + TL KV K + W+GL+
Sbjct: 45 KNRTLLKCCSGYCVDLLNKLANDIGFTYTLYKVRDEKWGLKTENGWNGLI 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,516
Number of Sequences: 27780
Number of extensions: 381089
Number of successful extensions: 1192
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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