Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6147
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.76 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.3  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   2.3  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   2.3  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   2.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.3  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   2.3  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   2.3  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.1  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   7.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   7.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 180  DRLHKDIYQEIRHAAEAHRQTRKHIRN 260
            +R H+DI+      AE H ++R+  RN
Sbjct: 1111 NRYHEDIFGITLRTAEVHNRSRETARN 1137


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 73 GNSSATGIVGGTVCSL 26
          G+S+  G+VGGT+ S+
Sbjct: 8  GSSAGVGVVGGTIASV 23


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 IDERTAKNRFT-SEEKRALDRLHKDIYQEIRHAAEAHRQTR 245
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 IDERTAKNRFT-SEEKRALDRLHKDIYQEIRHAAEAHRQTR 245
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 IDERTAKNRFT-SEEKRALDRLHKDIYQEIRHAAEAHRQTR 245
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 IDERTAKNRFT-SEEKRALDRLHKDIYQEIRHAAEAHRQTR 245
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 IDERTAKNRFT-SEEKRALDRLHKDIYQEIRHAAEAHRQTR 245
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 IDERTAKNRFT-SEEKRALDRLHKDIYQEIRHAAEAHRQTR 245
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 IDERTAKNRFT-SEEKRALDRLHKDIYQEIRHAAEAHRQTR 245
           ++ERT++NR++ S E+      ++  YQ+ R  ++   + R
Sbjct: 30  LEERTSRNRYSRSREREQNSYKNEREYQKYRETSKERSRDR 70


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 428 NCCITCVRSIMRCTVVAAASCG 363
           N  + C  SI    VV+A  CG
Sbjct: 153 NGTVNCTSSIASSGVVSAGECG 174


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 513 NPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEV 626
           NP+   L    ++  +  I   G D+  C  G   QEV
Sbjct: 90  NPKLGILGTHGRQCNDTSIGVDGCDLMCCGRGYKTQEV 127


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 513 NPRYDPLVKGVQEATEAGIKASGVDVRLCDVGAAVQEV 626
           NP+   L    ++  +  I   G D+  C  G   QEV
Sbjct: 91  NPKLGILGTHGRQCNDTSIGVDGCDLMCCGRGYKTQEV 128


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 465 YQSRSSLHHHIRELLY 418
           YQS   LHHH  ++LY
Sbjct: 70  YQSHHHLHHH--QVLY 83


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 676 QSVILMDIQLNLIKSTPARPS 738
           QSV    ++LN +  TPA P+
Sbjct: 32  QSVEFSPMELNALVGTPAAPN 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,484
Number of Sequences: 438
Number of extensions: 4677
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)