Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6145
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.55
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 27 1.3
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 2.2
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 26 3.8
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 3.8
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 25 6.7
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 8.9
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.55
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 82 PAGQTESSSAPRFKTPCIPATSHRYHTTP-TASHYSPRSTSRDHLQTATASNYG*TSNTV 258
P T +S P T C +TS Y +TP T+S+Y+ S++ T +N +++ +
Sbjct: 480 PYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 259 *SRAKLLALSFANSNHCKTWT 321
+ + + A +N C T T
Sbjct: 540 YTSTPVTSTPLATTN-CTTST 559
Score = 26.2 bits (55), Expect = 2.9
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +1
Query: 82 PAGQTESSSAPRFKTPCIPATSHRYHTTPTAS-----HYSPRSTSRDHLQT-ATASNYG* 243
P T +S P T C +TS Y +TP S STS + T T+SNY
Sbjct: 457 PYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTI 516
Query: 244 TSNT 255
+S+T
Sbjct: 517 SSST 520
Score = 26.2 bits (55), Expect = 2.9
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = +1
Query: 85 AGQTESSSAPRFKTPCIPATSHRYHTTPTASHYSPRSTSRDHLQTATASNYG*TSNTV*S 264
+ T +S P T C +TS Y +TP SP STS Q + S T +
Sbjct: 576 SSSTPVTSTPVTTTNCTTSTSVLYTSTPIT---SPNSTSSSSTQVSWNSTTPITGTSTSK 632
Query: 265 RAKLLALSFANSNHCKT 315
++ ++N T
Sbjct: 633 VTSSTSIPLTSTNRTST 649
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 82 PAGQTESSSAPRFKTPCIPATSHRYHTTPTASHYSPRSTSRDHLQTATASNY 237
P SSS P T C +TS Y +TP S +P +T+ + T+T+ Y
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTS--TPLATT--NCTTSTSVPY 458
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 94 TESSSAPRFKTPCIPATSHRYHTTP-TASHYSPRSTSRDHLQTATASN 234
T +S P T C +TS Y +TP T+S+Y+ S++ T +N
Sbjct: 543 TPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 145 SHRYHTTPTASHYSPRSTSR 204
S R H TP+ S Y+PRS R
Sbjct: 23 SQRRHFTPSRSRYTPRSAQR 42
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 82 PAGQTESSSAPR--FKTPCIPATSHRYHTTPTASHYSPRSTSRDHLQTATASNY 237
P+ S + P + P +P+ + R+ T S Y STSR Q+ NY
Sbjct: 480 PSADDHSRATPTRSVEAPTLPSYAPRHPTQANGSRYMNPSTSRMTPQSPYMQNY 533
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -2
Query: 343 SCKIYLSWSRSCSGCYWRRRGRV--VWLWTILYL 248
SC+ +SW + YW R+ +W + IL+L
Sbjct: 604 SCEDTVSWIDTFGSEYWENAARLGKIWSYLILFL 637
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 79 HPAGQTESSSAPRFKTPCIPATSHRYHTTPTASHYSPRSTSRDHLQTAT 225
+P + + P +P+TS TT S+YSP ++R T +
Sbjct: 484 YPHSKMSGFTLPTVNRTVMPSTSATATTTVYTSYYSPSYSARSFTGTGS 532
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 331 YLSWSRSCSGCYWRR 287
Y SWS SG YW R
Sbjct: 247 YYSWSNRNSGLYWTR 261
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 140 PHPIAITPRPLPVTTARALPPATTF 214
P P+ I P+P +T+ A+P + F
Sbjct: 402 PDPVTIPPQPRWITSLAAIPYSNLF 426
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,762
Number of Sequences: 5004
Number of extensions: 31821
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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